4NE3B

Human mhf1-mhf2 complex
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
74
structure length
74
Chain Sequence
SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH2 (32-60)AH3 (67-80)TI1 (25-28)TVIII1 (23-26)EMPTYAH1 (12-21)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Homo sapiens
publication title The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
pubmed doi rcsb
molecule keywords Centromere protein S
total genus 25
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2013-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF09415 CENP-X CENP-S associating Centromere protein X
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.100 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 4ne3B02
4NE3B 4DRBJ 4NE5B 4DRAE 4E45B 4NE6B 4E44B 3B0BC
chains in the Genus database with same CATH superfamily
1IS7A 2WSCK 4Q7JA 1WM9A 4DRAE 4E45B 4NE6B 1AIPC 4QPMA 2WSEK 1WPLA 1N3SA 1EL6A 5DMZA 1WURA 3LW5G 1EFUB 1TFEA 2LNZA 1A8RA 2KR1A 1GTPA 1N3TA 4DRBJ 3BMBA 1FBXA 2O01G 4NE5B 3LW5K 3VEJA 4E44B 1A9CA 1WUQA 4DU6A 4R8QA 1IS8A 2WSFG 1FB1A 2P11A 4NE3B 2WSCG 1N3RA 2LO0A 2PN0A 3B0BC 2WSEG 4JA3A 2WSFK
chains in the Genus database with same CATH topology
1IS7A 4Q7JA 1WM9A 4DRAE 4E45B 4NE6B 1AIPC 4QPMA 1WPLA 1N3SA 1EL6A 5DMZA 1WURA 1EFUB 1TFEA 2LNZA 1A8RA 2KR1A 1GTPA 1N3TA 4DRBJ 3BMBA 1FBXA 3VEJA 4NE5B 4E44B 1A9CA 1WUQA 4DU6A 4R8QA 1IS8A 1FB1A 2P11A 4NE3B 1N3RA 2LO0A 2PN0A 3B0BC 4JA3A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4NE3 B;  4DRB J;  4NE5 B;  4DRA E;  4E45 B;  4NE6 B;  4E44 B;  3B0B C; 
#chains in the Genus database with same CATH topology
 1IS7 A;  2WSC K;  4Q7J A;  1WM9 A;  4DRA E;  4E45 B;  4NE6 B;  1AIP C;  4QPM A;  2WSE K;  1WPL A;  1N3S A;  1EL6 A;  5DMZ A;  1WUR A;  3LW5 G;  1EFU B;  1TFE A;  2LNZ A;  1A8R A;  2KR1 A;  1GTP A;  1N3T A;  4DRB J;  3BMB A;  1FBX A;  2O01 G;  4NE5 B;  3LW5 K;  3VEJ A;  4E44 B;  1A9C A;  1WUQ A;  4DU6 A;  4R8Q A;  1IS8 A;  2WSF G;  1FB1 A;  2P11 A;  4NE3 B;  2WSC G;  1N3R A;  2LO0 A;  2PN0 A;  3B0B C;  2WSE G;  4JA3 A;  2WSF K; 
#chains in the Genus database with same CATH homology
 1IS7 A;  4Q7J A;  1WM9 A;  4DRA E;  4E45 B;  4NE6 B;  1AIP C;  4QPM A;  1WPL A;  1N3S A;  1EL6 A;  5DMZ A;  1WUR A;  1EFU B;  1TFE A;  2LNZ A;  1A8R A;  2KR1 A;  1GTP A;  1N3T A;  4DRB J;  3BMB A;  1FBX A;  3VEJ A;  4NE5 B;  4E44 B;  1A9C A;  1WUQ A;  4DU6 A;  4R8Q A;  1IS8 A;  1FB1 A;  2P11 A;  4NE3 B;  1N3R A;  2LO0 A;  2PN0 A;  3B0B C;  4JA3 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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