1YOY | Genus

Total Genus 56

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	166
structure length	146
Chain Sequence	MDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHSFRAAIIAFILALKSGESVEKACKAATAALFHDLHEAREEQLSWMESKPDFSDVEVYVSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEIYRVLMERKNPVWW

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Archaeoglobus fulgidus
publication title	The crystal structure of predicted coding region AF1432 from Archaeoglobus Fulgidus rcsb
molecule keywords	hypothetical protein AF1432
total genus	56
structure length	146
sequence length	166
ec nomenclature
pdb deposition date	2005-01-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01966	HD	HD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	1yoyA00

4TNXA 4QG4A 2PGSA 5TK6A 2CQZA 5TK7A 4L7WA 5AO0A 5TK9A 2Q14A 4TNZA 4X9EA 4ME4A 2DQBA 4TO6A 4Q7HA 4XDSA 4N71A 3P3QA 2OGIA 5AO1A 3TMCA 3LJXA 1VQRA 3MZOA 4QFYA 4LRLA 1VJ7A 4RXRA 4L7EA 4BZBA 3TMBA 4QG2A 4TO5A 1U6ZA 2PQ7A 3RF0A 5TKAA 3CCGA 3I7AA 3MEMA 2O6IA 4TO4A 4QG1A 4TNRA 4MLMA 4R8ZA 3HI0A 4RXQA 4TO1A 3KH1A 4TO2A 2GZ4A 4TO3A 4MZ7A 2O08A 1XX7A 4TNQA 4MLNA 4MDZA 4QG0A 2HEKA 3BG2A 3NR1A 4BZCA 1YOYA 3NQWA 2PARA 4ZWEA 3HC1A 5AO4A 4L1JA 4L1JB 2PAQA 4RXSA 4TNPA 4TO0A 2FLOA 3TM8A 4QFXA 3TMDA 3M1TA 3IRHA 4RXPA 4DMBA 5AO2A 4N6WA 3U1NA 1YNBA 4ZWGA 4QFZA 5AO3A 4RXOA 4MCWA 2PAUA 4TNYA 5TK8A
chains in the Genus database with same CATH superfamily

4TNXA 4QG4A 2PGSA 5TK6A 2CQZA 5TK7A 4L7WA 5AO0A 5TK9A 2Q14A 4TNZA 4X9EA 4ME4A 2DQBA 4QQYA 4TO6A 4Q7HA 4XDSA 4N71A 3P3QA 2OGIA 5AO1A 3TMCA 3LJXA 1VQRA 3MZOA 4QFYA 4LRLA 1VJ7A 4QQXA 4RXRA 4L7EA 4BZBA 3TMBA 3KQ5A 4QG2A 4QQZA 4TO5A 3S4LA 1U6ZA 2PQ7A 3RF0A 5TKAA 3CCGA 3I7AA 3MEMA 2O6IA 4TO4A 4QQWA 4QG1A 4TNRA 4MLMA 4R8ZA 3HI0A 4RXQA 4TO1A 3KH1A 4TO2A 2GZ4A 4TO3A 4MZ7A 2O08A 3GW7A 3SK9A 1XX7A 4TNQA 4MLNA 4MDZA 4QG0A 2HEKA 3BG2A 3NR1A 4BZCA 1YOYA 3SKDA 3NQWA 2PARA 4ZWEA 3HC1A 5AO4A 4L1JA 4L1JB 4Q2DA 2PAQA 4RXSA 4TNPA 4TO0A 2FLOA 3TM8A 4QFXA 3TMDA 3M1TA 3IRHA 4RXPA 4DMBA 5AO2A 4N6WA 3U1NA 1YNBA 4ZWGA 4QFZA 5AO3A 4RXOA 4Q2CA 4MCWA 2PAUA 4TNYA 5TK8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4TNX A;  4QG4 A;  2PGS A;  5TK6 A;  2CQZ A;  5TK7 A;  4L7W A;  5AO0 A;  5TK9 A;  2Q14 A;  4TNZ A;  4X9E A;  4ME4 A;  2DQB A;  4TO6 A;  4Q7H A;  4XDS A;  4N71 A;  3P3Q A;  2OGI A;  5AO1 A;  3TMC A;  3LJX A;  1VQR A;  3MZO A;  4QFY A;  4LRL A;  1VJ7 A;  4RXR A;  4L7E A;  4BZB A;  3TMB A;  4QG2 A;  4TO5 A;  1U6Z A;  2PQ7 A;  3RF0 A;  5TKA A;  3CCG A;  3I7A A;  3MEM A;  2O6I A;  4TO4 A;  4QG1 A;  4TNR A;  4MLM A;  4R8Z A;  3HI0 A;  4RXQ A;  4TO1 A;  3KH1 A;  4TO2 A;  2GZ4 A;  4TO3 A;  4MZ7 A;  2O08 A;  1XX7 A;  4TNQ A;  4MLN A;  4MDZ A;  4QG0 A;  2HEK A;  3BG2 A;  3NR1 A;  4BZC A;  1YOY A;  3NQW A;  2PAR A;  4ZWE A;  3HC1 A;  5AO4 A;  4L1J A;  4L1J B;  2PAQ A;  4RXS A;  4TNP A;  4TO0 A;  2FLO A;  3TM8 A;  4QFX A;  3TMD A;  3M1T A;  3IRH A;  4RXP A;  4DMB A;  5AO2 A;  4N6W A;  3U1N A;  1YNB A;  4ZWG A;  4QFZ A;  5AO3 A;  4RXO A;  4MCW A;  2PAU A;  4TNY A;  5TK8 A; 
#chains in the Genus database with same CATH topology
 4TNX A;  4QG4 A;  2PGS A;  5TK6 A;  2CQZ A;  5TK7 A;  4L7W A;  5AO0 A;  5TK9 A;  2Q14 A;  4TNZ A;  4X9E A;  4ME4 A;  2DQB A;  4QQY A;  4TO6 A;  4Q7H A;  4XDS A;  4N71 A;  3P3Q A;  2OGI A;  5AO1 A;  3TMC A;  3LJX A;  1VQR A;  3MZO A;  4QFY A;  4LRL A;  1VJ7 A;  4QQX A;  4RXR A;  4L7E A;  4BZB A;  3TMB A;  3KQ5 A;  4QG2 A;  4QQZ A;  4TO5 A;  3S4L A;  1U6Z A;  2PQ7 A;  3RF0 A;  5TKA A;  3CCG A;  3I7A A;  3MEM A;  2O6I A;  4TO4 A;  4QQW A;  4QG1 A;  4TNR A;  4MLM A;  4R8Z A;  3HI0 A;  4RXQ A;  4TO1 A;  3KH1 A;  4TO2 A;  2GZ4 A;  4TO3 A;  4MZ7 A;  2O08 A;  3GW7 A;  3SK9 A;  1XX7 A;  4TNQ A;  4MLN A;  4MDZ A;  4QG0 A;  2HEK A;  3BG2 A;  3NR1 A;  4BZC A;  1YOY A;  3SKD A;  3NQW A;  2PAR A;  4ZWE A;  3HC1 A;  5AO4 A;  4L1J A;  4L1J B;  4Q2D A;  2PAQ A;  4RXS A;  4TNP A;  4TO0 A;  2FLO A;  3TM8 A;  4QFX A;  3TMD A;  3M1T A;  3IRH A;  4RXP A;  4DMB A;  5AO2 A;  4N6W A;  3U1N A;  1YNB A;  4ZWG A;  4QFZ A;  5AO3 A;  4RXO A;  4Q2C A;  4MCW A;  2PAU A;  4TNY A;  5TK8 A; 
#chains in the Genus database with same CATH homology
 4TNX A;  4QG4 A;  2PGS A;  5TK6 A;  2CQZ A;  5TK7 A;  4L7W A;  5AO0 A;  5TK9 A;  2Q14 A;  4TNZ A;  4X9E A;  4ME4 A;  2DQB A;  4QQY A;  4TO6 A;  4Q7H A;  4XDS A;  4N71 A;  3P3Q A;  2OGI A;  5AO1 A;  3TMC A;  3LJX A;  1VQR A;  3MZO A;  4QFY A;  4LRL A;  1VJ7 A;  4QQX A;  4RXR A;  4L7E A;  4BZB A;  3TMB A;  3KQ5 A;  4QG2 A;  4QQZ A;  4TO5 A;  3S4L A;  1U6Z A;  2PQ7 A;  3RF0 A;  5TKA A;  3CCG A;  3I7A A;  3MEM A;  2O6I A;  4TO4 A;  4QQW A;  4QG1 A;  4TNR A;  4MLM A;  4R8Z A;  3HI0 A;  4RXQ A;  4TO1 A;  3KH1 A;  4TO2 A;  2GZ4 A;  4TO3 A;  4MZ7 A;  2O08 A;  3GW7 A;  3SK9 A;  1XX7 A;  4TNQ A;  4MLN A;  4MDZ A;  4QG0 A;  2HEK A;  3BG2 A;  3NR1 A;  4BZC A;  1YOY A;  3SKD A;  3NQW A;  2PAR A;  4ZWE A;  3HC1 A;  5AO4 A;  4L1J A;  4L1J B;  4Q2D A;  2PAQ A;  4RXS A;  4TNP A;  4TO0 A;  2FLO A;  3TM8 A;  4QFX A;  3TMD A;  3M1T A;  3IRH A;  4RXP A;  4DMB A;  5AO2 A;  4N6W A;  3U1N A;  1YNB A;  4ZWG A;  4QFZ A;  5AO3 A;  4RXO A;  4Q2C A;  4MCW A;  2PAU A;  4TNY A;  5TK8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1YOYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations