2BH7A

Crystal structure of a semet derivative of amid at 2.2 angstroms
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
254
structure length
254
Chain Sequence
GIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (11-14)S1 (8-11)S2 (14-17)TVIII1 (18-21)TIV1 (22-25)TIV7 (93-96)S10 (100-105)S3 (31-36)AH1 (41-48)TI1 (77-80)S6 (69-70)TIV2 (50-53)S7 (73-74)TIV3 (65-68)S4 (57-59)S5 (65-66)TVIII2 (60-63)S9 (93-94)3H2 (145-147)3H3 (151-154)S8 (89-90)S13 (148-150)TIV4 (83-86)TIV5 (85-88)AH7 (245-258)TIV6 (89-92)S11 (110-113)AH2 (124-141)AH3 (168-173)TI2 (155-158)AH5 (200-210)O2 (215-217)TVIa1 (160-163)O1 (166-168)AH4 (182-189)TVIII3 (236-239)TIV9 (189-192)TI6 (235-238)3H4 (227-234)TI5 (193-196)AH6 (220-226)3H1 (96-98)TI4 (163-166)TIV8 (112-115)S12 (116-119)Updating...
connected with : NaN
molecule tags Hydrolase
publication title Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
pubmed doi rcsb
molecule keywords N-ACETYLMURAMOYL-L-ALANINE AMIDASE
total genus 72
structure length 254
sequence length 254
ec nomenclature ec 3.5.1.28: N-acetylmuramoyl-L-alanine amidase.
pdb deposition date 2005-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.101.10 Mainly Alpha Orthogonal Bundle Muramoyl-pentapeptide Carboxypeptidase; domain 1 PGBD-like superfamily/PGBD 2bh7A03
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 2bh7A02
2CB3A 2APHA 3T39A 4KNLA 1YCKA 3QJ1A 4G54A 4OPPA 5DWFA 2R90A 1Z6IA 2AR3A 2BH7A 3D2ZA 3NW3A 3NNOA 2EAXA 1J3GA 5CTVA 2Y2BA 3O4KA 1LBUA 1OHTA 1AROL 4OLSA 4BPAA 4BOLA 2XZ8A 4Q8SA 2XZ4A 3LATA 4BJ4A 4X36A 4OUGA 4FNNA 5E0BA 2R2KA 4LPQA 2F2LX 4Z8IA 1SXRA 1SK4A 1SK3A 3TRUA 3C2XA 3QS0A 2Y2CA 2Z9NA 4ORVA 3UMQA 3UMLA 2RKQA 3RDRA 4IVVA 3OGXA 2L47A 3CXAA 2Y2DA 2WKXA 2EAVA 1LBAA 3D2YA 4GF9A 3T2VA 3NG4A 1L6JA 3QV4A 3CORA 4BXEA 2F2LA 5E0AA 1EAKA 4KNKA 3EP1A 1YB0A 4BXDA 4Q9EA 3UILA 1S2JA 1TWQA 3USXA 3HMBA 2Y2EA 4ZXMA 2Y28A 4BXJA 3RT4A 3BKVA 3CG9A 3BKHA
chains in the Genus database with same CATH superfamily
2CB3A 2APHA 3T39A 4KNLA 1YCKA 3QJ1A 4G54A 4OPPA 5DWFA 2R90A 1Z6IA 2AR3A 2BH7A 3D2ZA 3NW3A 3NNOA 2EAXA 1J3GA 5CTVA 2Y2BA 3O4KA 1LBUA 1OHTA 1AROL 4OLSA 4BPAA 4BOLA 2XZ8A 4Q8SA 2XZ4A 3LATA 4BJ4A 4X36A 4OUGA 4FNNA 5E0BA 2R2KA 4LPQA 2F2LX 4Z8IA 1SXRA 1SK4A 1SK3A 3TRUA 3C2XA 3QS0A 2Y2CA 2Z9NA 4ORVA 3UMQA 3UMLA 2RKQA 3RDRA 4IVVA 3OGXA 2L47A 3CXAA 2Y2DA 2WKXA 2EAVA 1LBAA 3D2YA 4GF9A 3T2VA 3NG4A 1L6JA 3QV4A 3CORA 4BXEA 2F2LA 5E0AA 1EAKA 4KNKA 3EP1A 1YB0A 4BXDA 4Q9EA 3UILA 1S2JA 1TWQA 3USXA 3HMBA 2Y2EA 4ZXMA 2Y28A 4BXJA 3RT4A 3BKVA 3CG9A 3BKHA
chains in the Genus database with same CATH topology
2CB3A 2APHA 3T39A 4KNLA 1YCKA 3QJ1A 4G54A 4OPPA 5DWFA 2R90A 1Z6IA 2AR3A 2BH7A 3D2ZA 3NW3A 3NNOA 2EAXA 1J3GA 5CTVA 2Y2BA 3O4KA 1LBUA 1OHTA 1AROL 4OLSA 4BPAA 4BOLA 2XZ8A 4Q8SA 2XZ4A 3LATA 4BJ4A 4X36A 4OUGA 4FNNA 5E0BA 2R2KA 4LPQA 2F2LX 4Z8IA 1SXRA 1SK4A 1SK3A 3TRUA 3C2XA 3QS0A 2Y2CA 2Z9NA 4ORVA 3UMQA 3UMLA 2RKQA 3RDRA 4IVVA 3OGXA 2L47A 3CXAA 2Y2DA 2WKXA 2EAVA 1LBAA 3D2YA 4GF9A 3T2VA 3NG4A 1L6JA 3QV4A 3CORA 4BXEA 2F2LA 5E0AA 1EAKA 4KNKA 3EP1A 1YB0A 4BXDA 4Q9EA 3UILA 1S2JA 1TWQA 3USXA 3HMBA 2Y2EA 4ZXMA 2Y28A 4BXJA 3RT4A 3BKVA 3CG9A 3BKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CB3 A;  2APH A;  3T39 A;  4KNL A;  1YCK A;  3QJ1 A;  4G54 A;  4OPP A;  5DWF A;  2R90 A;  1Z6I A;  2AR3 A;  2BH7 A;  3D2Z A;  3NW3 A;  3NNO A;  2EAX A;  1J3G A;  5CTV A;  2Y2B A;  3O4K A;  1LBU A;  1OHT A;  1ARO L;  4OLS A;  4BPA A;  4BOL A;  2XZ8 A;  4Q8S A;  2XZ4 A;  3LAT A;  4BJ4 A;  4X36 A;  4OUG A;  4FNN A;  5E0B A;  2R2K A;  4LPQ A;  2F2L X;  4Z8I A;  1SXR A;  1SK4 A;  1SK3 A;  3TRU A;  3C2X A;  3QS0 A;  2Y2C A;  2Z9N A;  4ORV A;  3UMQ A;  3UML A;  2RKQ A;  3RDR A;  4IVV A;  3OGX A;  2L47 A;  3CXA A;  2Y2D A;  2WKX A;  2EAV A;  1LBA A;  3D2Y A;  4GF9 A;  3T2V A;  3NG4 A;  1L6J A;  3QV4 A;  3COR A;  4BXE A;  2F2L A;  5E0A A;  1EAK A;  4KNK A;  3EP1 A;  1YB0 A;  4BXD A;  4Q9E A;  3UIL A;  1S2J A;  1TWQ A;  3USX A;  3HMB A;  2Y2E A;  4ZXM A;  2Y28 A;  4BXJ A;  3RT4 A;  3BKV A;  3CG9 A;  3BKH A; 
#chains in the Genus database with same CATH topology
 2CB3 A;  2APH A;  3T39 A;  4KNL A;  1YCK A;  3QJ1 A;  4G54 A;  4OPP A;  5DWF A;  2R90 A;  1Z6I A;  2AR3 A;  2BH7 A;  3D2Z A;  3NW3 A;  3NNO A;  2EAX A;  1J3G A;  5CTV A;  2Y2B A;  3O4K A;  1LBU A;  1OHT A;  1ARO L;  4OLS A;  4BPA A;  4BOL A;  2XZ8 A;  4Q8S A;  2XZ4 A;  3LAT A;  4BJ4 A;  4X36 A;  4OUG A;  4FNN A;  5E0B A;  2R2K A;  4LPQ A;  2F2L X;  4Z8I A;  1SXR A;  1SK4 A;  1SK3 A;  3TRU A;  3C2X A;  3QS0 A;  2Y2C A;  2Z9N A;  4ORV A;  3UMQ A;  3UML A;  2RKQ A;  3RDR A;  4IVV A;  3OGX A;  2L47 A;  3CXA A;  2Y2D A;  2WKX A;  2EAV A;  1LBA A;  3D2Y A;  4GF9 A;  3T2V A;  3NG4 A;  1L6J A;  3QV4 A;  3COR A;  4BXE A;  2F2L A;  5E0A A;  1EAK A;  4KNK A;  3EP1 A;  1YB0 A;  4BXD A;  4Q9E A;  3UIL A;  1S2J A;  1TWQ A;  3USX A;  3HMB A;  2Y2E A;  4ZXM A;  2Y28 A;  4BXJ A;  3RT4 A;  3BKV A;  3CG9 A;  3BKH A; 
#chains in the Genus database with same CATH homology
 2CB3 A;  2APH A;  3T39 A;  4KNL A;  1YCK A;  3QJ1 A;  4G54 A;  4OPP A;  5DWF A;  2R90 A;  1Z6I A;  2AR3 A;  2BH7 A;  3D2Z A;  3NW3 A;  3NNO A;  2EAX A;  1J3G A;  5CTV A;  2Y2B A;  3O4K A;  1LBU A;  1OHT A;  1ARO L;  4OLS A;  4BPA A;  4BOL A;  2XZ8 A;  4Q8S A;  2XZ4 A;  3LAT A;  4BJ4 A;  4X36 A;  4OUG A;  4FNN A;  5E0B A;  2R2K A;  4LPQ A;  2F2L X;  4Z8I A;  1SXR A;  1SK4 A;  1SK3 A;  3TRU A;  3C2X A;  3QS0 A;  2Y2C A;  2Z9N A;  4ORV A;  3UMQ A;  3UML A;  2RKQ A;  3RDR A;  4IVV A;  3OGX A;  2L47 A;  3CXA A;  2Y2D A;  2WKX A;  2EAV A;  1LBA A;  3D2Y A;  4GF9 A;  3T2V A;  3NG4 A;  1L6J A;  3QV4 A;  3COR A;  4BXE A;  2F2L A;  5E0A A;  1EAK A;  4KNK A;  3EP1 A;  1YB0 A;  4BXD A;  4Q9E A;  3UIL A;  1S2J A;  1TWQ A;  3USX A;  3HMB A;  2Y2E A;  4ZXM A;  2Y28 A;  4BXJ A;  3RT4 A;  3BKV A;  3CG9 A;  3BKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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