2BH7A

Crystal structure of a semet derivative of amid at 2.2 angstroms
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
254
structure length
254
Chain Sequence
GIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords N-ACETYLMURAMOYL-L-ALANINE AMIDASE
total genus 72
structure length 254
sequence length 254
ec nomenclature ec 3.5.1.28: N-acetylmuramoyl-L-alanine amidase.
pdb deposition date 2005-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.101.10 Mainly Alpha Orthogonal Bundle Muramoyl-pentapeptide Carboxypeptidase; domain 1 PGBD-like superfamily/PGBD 2bh7A03
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 2bh7A02
3QV4A 1LBUA 2Y2CA 2BH7A 1AROL 3USXA 4OUGA 2RKQA 5E0AA 3NG4A 4BPAA 4Z8IA 3NNOA 2F2LX 3BKHA 1TWQA 4OLSA 3QS0A 4Q8SA 3UMQA 1L6JA 3BKVA 3O4KA 1YB0A 3UMLA 3OGXA 2Y2DA 3QJ1A 4ORVA 3C2XA 2R2KA 2Y28A 3D2YA 3RDRA 1Z6IA 3CG9A 3LATA 5CTVA 1SK4A 3RT4A 1EAKA 4BXEA 2R90A 4OPPA 4BXJA 2Y2BA 2F2LA 4BXDA 3CXAA 1LBAA 5E0BA 4KNKA 5DWFA 4LPQA 3T2VA 4Q9EA 3CORA 4KNLA 3HMBA 4G54A 2EAXA 2EAVA 1S2JA 2Y2EA 1SXRA 2Z9NA 2WKXA 2XZ8A 3NW3A 3T39A 4BJ4A 3TRUA 2AR3A 3D2ZA 3EP1A 2L47A 4BOLA 2XZ4A 4ZXMA 4GF9A 4FNNA 1YCKA 1J3GA 4IVVA 1SK3A 4X36A 1OHTA 2APHA 2CB3A 3UILA
chains in the Genus database with same CATH superfamily
3QV4A 1LBUA 2Y2CA 2BH7A 1AROL 3USXA 4OUGA 2RKQA 5E0AA 3NG4A 4BPAA 4Z8IA 3NNOA 2F2LX 3BKHA 1TWQA 4OLSA 3QS0A 4Q8SA 3UMQA 1L6JA 3BKVA 3O4KA 1YB0A 3UMLA 3OGXA 2Y2DA 3QJ1A 4ORVA 3C2XA 2R2KA 2Y28A 3D2YA 3RDRA 1Z6IA 3CG9A 3LATA 5CTVA 1SK4A 3RT4A 1EAKA 4BXEA 2R90A 4OPPA 4BXJA 2Y2BA 2F2LA 4BXDA 3CXAA 1LBAA 5E0BA 4KNKA 5DWFA 4LPQA 3T2VA 4Q9EA 3CORA 4KNLA 3HMBA 4G54A 2EAXA 2EAVA 1S2JA 2Y2EA 1SXRA 2Z9NA 2WKXA 2XZ8A 3NW3A 3T39A 4BJ4A 3TRUA 2AR3A 3D2ZA 3EP1A 2L47A 4BOLA 2XZ4A 4ZXMA 4GF9A 4FNNA 1YCKA 1J3GA 4IVVA 1SK3A 4X36A 1OHTA 2APHA 2CB3A 3UILA
chains in the Genus database with same CATH topology
3QV4A 1LBUA 2Y2CA 2BH7A 1AROL 3USXA 4OUGA 2RKQA 5E0AA 3NG4A 4BPAA 4Z8IA 3NNOA 2F2LX 3BKHA 1TWQA 4OLSA 3QS0A 4Q8SA 3UMQA 1L6JA 3BKVA 3O4KA 1YB0A 3UMLA 3OGXA 2Y2DA 3QJ1A 4ORVA 3C2XA 2R2KA 2Y28A 3D2YA 3RDRA 1Z6IA 3CG9A 3LATA 5CTVA 1SK4A 3RT4A 1EAKA 4BXEA 2R90A 4OPPA 4BXJA 2Y2BA 2F2LA 4BXDA 3CXAA 1LBAA 5E0BA 4KNKA 5DWFA 4LPQA 3T2VA 4Q9EA 3CORA 4KNLA 3HMBA 4G54A 2EAXA 2EAVA 1S2JA 2Y2EA 1SXRA 2Z9NA 2WKXA 2XZ8A 3NW3A 3T39A 4BJ4A 3TRUA 2AR3A 3D2ZA 3EP1A 2L47A 4BOLA 2XZ4A 4ZXMA 4GF9A 4FNNA 1YCKA 1J3GA 4IVVA 1SK3A 4X36A 1OHTA 2APHA 2CB3A 3UILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QV4 A;  1LBU A;  2Y2C A;  2BH7 A;  1ARO L;  3USX A;  4OUG A;  2RKQ A;  5E0A A;  3NG4 A;  4BPA A;  4Z8I A;  3NNO A;  2F2L X;  3BKH A;  1TWQ A;  4OLS A;  3QS0 A;  4Q8S A;  3UMQ A;  1L6J A;  3BKV A;  3O4K A;  1YB0 A;  3UML A;  3OGX A;  2Y2D A;  3QJ1 A;  4ORV A;  3C2X A;  2R2K A;  2Y28 A;  3D2Y A;  3RDR A;  1Z6I A;  3CG9 A;  3LAT A;  5CTV A;  1SK4 A;  3RT4 A;  1EAK A;  4BXE A;  2R90 A;  4OPP A;  4BXJ A;  2Y2B A;  2F2L A;  4BXD A;  3CXA A;  1LBA A;  5E0B A;  4KNK A;  5DWF A;  4LPQ A;  3T2V A;  4Q9E A;  3COR A;  4KNL A;  3HMB A;  4G54 A;  2EAX A;  2EAV A;  1S2J A;  2Y2E A;  1SXR A;  2Z9N A;  2WKX A;  2XZ8 A;  3NW3 A;  3T39 A;  4BJ4 A;  3TRU A;  2AR3 A;  3D2Z A;  3EP1 A;  2L47 A;  4BOL A;  2XZ4 A;  4ZXM A;  4GF9 A;  4FNN A;  1YCK A;  1J3G A;  4IVV A;  1SK3 A;  4X36 A;  1OHT A;  2APH A;  2CB3 A;  3UIL A; 
#chains in the Genus database with same CATH topology
 3QV4 A;  1LBU A;  2Y2C A;  2BH7 A;  1ARO L;  3USX A;  4OUG A;  2RKQ A;  5E0A A;  3NG4 A;  4BPA A;  4Z8I A;  3NNO A;  2F2L X;  3BKH A;  1TWQ A;  4OLS A;  3QS0 A;  4Q8S A;  3UMQ A;  1L6J A;  3BKV A;  3O4K A;  1YB0 A;  3UML A;  3OGX A;  2Y2D A;  3QJ1 A;  4ORV A;  3C2X A;  2R2K A;  2Y28 A;  3D2Y A;  3RDR A;  1Z6I A;  3CG9 A;  3LAT A;  5CTV A;  1SK4 A;  3RT4 A;  1EAK A;  4BXE A;  2R90 A;  4OPP A;  4BXJ A;  2Y2B A;  2F2L A;  4BXD A;  3CXA A;  1LBA A;  5E0B A;  4KNK A;  5DWF A;  4LPQ A;  3T2V A;  4Q9E A;  3COR A;  4KNL A;  3HMB A;  4G54 A;  2EAX A;  2EAV A;  1S2J A;  2Y2E A;  1SXR A;  2Z9N A;  2WKX A;  2XZ8 A;  3NW3 A;  3T39 A;  4BJ4 A;  3TRU A;  2AR3 A;  3D2Z A;  3EP1 A;  2L47 A;  4BOL A;  2XZ4 A;  4ZXM A;  4GF9 A;  4FNN A;  1YCK A;  1J3G A;  4IVV A;  1SK3 A;  4X36 A;  1OHT A;  2APH A;  2CB3 A;  3UIL A; 
#chains in the Genus database with same CATH homology
 3QV4 A;  1LBU A;  2Y2C A;  2BH7 A;  1ARO L;  3USX A;  4OUG A;  2RKQ A;  5E0A A;  3NG4 A;  4BPA A;  4Z8I A;  3NNO A;  2F2L X;  3BKH A;  1TWQ A;  4OLS A;  3QS0 A;  4Q8S A;  3UMQ A;  1L6J A;  3BKV A;  3O4K A;  1YB0 A;  3UML A;  3OGX A;  2Y2D A;  3QJ1 A;  4ORV A;  3C2X A;  2R2K A;  2Y28 A;  3D2Y A;  3RDR A;  1Z6I A;  3CG9 A;  3LAT A;  5CTV A;  1SK4 A;  3RT4 A;  1EAK A;  4BXE A;  2R90 A;  4OPP A;  4BXJ A;  2Y2B A;  2F2L A;  4BXD A;  3CXA A;  1LBA A;  5E0B A;  4KNK A;  5DWF A;  4LPQ A;  3T2V A;  4Q9E A;  3COR A;  4KNL A;  3HMB A;  4G54 A;  2EAX A;  2EAV A;  1S2J A;  2Y2E A;  1SXR A;  2Z9N A;  2WKX A;  2XZ8 A;  3NW3 A;  3T39 A;  4BJ4 A;  3TRU A;  2AR3 A;  3D2Z A;  3EP1 A;  2L47 A;  4BOL A;  2XZ4 A;  4ZXM A;  4GF9 A;  4FNN A;  1YCK A;  1J3G A;  4IVV A;  1SK3 A;  4X36 A;  1OHT A;  2APH A;  2CB3 A;  3UIL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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