2PAR | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	186
structure length	175
Chain Sequence	KQSHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASAVLTGDLPTEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFMEIFVPSFH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. pubmed doi rcsb
molecule keywords	5'-deoxynucleotidase YfbR
total genus	60
structure length	175
sequence length	186
chains with identical sequence	B
ec nomenclature	ec 3.1.3.89: 5'-deoxynucleotidase.
pdb deposition date	2007-03-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01966	HD	HD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	2parA00

2PQ7A 4TO0A 4TNQA 4QG2A 2O6IA 4TO1A 5AO0A 4L1JA 3HI0A 4QFZA 3KH1A 4MDZA 4L7WA 5TK7A 3RF0A 4QFYA 3NQWA 2OGIA 2PGSA 3TMCA 4RXPA 2PARA 4ME4A 5TK9A 2PAQA 4L7EA 2GZ4A 2PAUA 5AO3A 4MLNA 4TNXA 3U1NA 3TMBA 3LJXA 4XDSA 4RXSA 1YOYA 1U6ZA 3CCGA 4N6WA 4QG4A 3M1TA 4ZWGA 4QFXA 4TO6A 4MLMA 1VJ7A 3IRHA 4TO4A 4R8ZA 5TK6A 4RXQA 4BZBA 4TNRA 5TK8A 5AO1A 1VQRA 4MCWA 4QG1A 5TKAA 3HC1A 3MEMA 5AO4A 2CQZA 4TO2A 4L1JB 4RXOA 4TNPA 2FLOA 2DQBA 3I7AA 4MZ7A 4TO5A 3NR1A 4TNZA 4BZCA 4X9EA 4QG0A 2Q14A 3TM8A 1XX7A 3TMDA 1YNBA 4Q7HA 4DMBA 3P3QA 2HEKA 4TO3A 2O08A 4TNYA 5AO2A 4N71A 3BG2A 4RXRA 4LRLA 3MZOA 4ZWEA
chains in the Genus database with same CATH superfamily

2PQ7A 4TO0A 4TNQA 4QG2A 2O6IA 4TO1A 5AO0A 4L1JA 3HI0A 4QFZA 3KH1A 4MDZA 4L7WA 5TK7A 3RF0A 4QFYA 3NQWA 2OGIA 2PGSA 3TMCA 4RXPA 4QQWA 2PARA 4ME4A 5TK9A 2PAQA 4L7EA 2GZ4A 2PAUA 5AO3A 4MLNA 4TNXA 3U1NA 3TMBA 3LJXA 4XDSA 4RXSA 1YOYA 1U6ZA 3CCGA 4QQYA 4N6WA 4QG4A 3M1TA 4Q2CA 4ZWGA 4QFXA 4TO6A 4MLMA 3GW7A 1VJ7A 3IRHA 4TO4A 4R8ZA 5TK6A 4RXQA 4BZBA 4TNRA 5TK8A 5AO1A 1VQRA 3KQ5A 4MCWA 4QG1A 5TKAA 3HC1A 3MEMA 4Q2DA 5AO4A 2CQZA 4TO2A 4L1JB 4RXOA 4TNPA 3S4LA 2FLOA 2DQBA 3I7AA 4MZ7A 4TO5A 3NR1A 4TNZA 4BZCA 4X9EA 4QG0A 2Q14A 4QQZA 3TM8A 4QQXA 1XX7A 3TMDA 1YNBA 3SK9A 4Q7HA 4DMBA 3SKDA 3P3QA 2HEKA 4TO3A 2O08A 4TNYA 5AO2A 4N71A 3BG2A 4RXRA 4LRLA 3MZOA 4ZWEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2PQ7 A;  4TO0 A;  4TNQ A;  4QG2 A;  2O6I A;  4TO1 A;  5AO0 A;  4L1J A;  3HI0 A;  4QFZ A;  3KH1 A;  4MDZ A;  4L7W A;  5TK7 A;  3RF0 A;  4QFY A;  3NQW A;  2OGI A;  2PGS A;  3TMC A;  4RXP A;  2PAR A;  4ME4 A;  5TK9 A;  2PAQ A;  4L7E A;  2GZ4 A;  2PAU A;  5AO3 A;  4MLN A;  4TNX A;  3U1N A;  3TMB A;  3LJX A;  4XDS A;  4RXS A;  1YOY A;  1U6Z A;  3CCG A;  4N6W A;  4QG4 A;  3M1T A;  4ZWG A;  4QFX A;  4TO6 A;  4MLM A;  1VJ7 A;  3IRH A;  4TO4 A;  4R8Z A;  5TK6 A;  4RXQ A;  4BZB A;  4TNR A;  5TK8 A;  5AO1 A;  1VQR A;  4MCW A;  4QG1 A;  5TKA A;  3HC1 A;  3MEM A;  5AO4 A;  2CQZ A;  4TO2 A;  4L1J B;  4RXO A;  4TNP A;  2FLO A;  2DQB A;  3I7A A;  4MZ7 A;  4TO5 A;  3NR1 A;  4TNZ A;  4BZC A;  4X9E A;  4QG0 A;  2Q14 A;  3TM8 A;  1XX7 A;  3TMD A;  1YNB A;  4Q7H A;  4DMB A;  3P3Q A;  2HEK A;  4TO3 A;  2O08 A;  4TNY A;  5AO2 A;  4N71 A;  3BG2 A;  4RXR A;  4LRL A;  3MZO A;  4ZWE A; 
#chains in the Genus database with same CATH topology
 2PQ7 A;  4TO0 A;  4TNQ A;  4QG2 A;  2O6I A;  4TO1 A;  5AO0 A;  4L1J A;  3HI0 A;  4QFZ A;  3KH1 A;  4MDZ A;  4L7W A;  5TK7 A;  3RF0 A;  4QFY A;  3NQW A;  2OGI A;  2PGS A;  3TMC A;  4RXP A;  4QQW A;  2PAR A;  4ME4 A;  5TK9 A;  2PAQ A;  4L7E A;  2GZ4 A;  2PAU A;  5AO3 A;  4MLN A;  4TNX A;  3U1N A;  3TMB A;  3LJX A;  4XDS A;  4RXS A;  1YOY A;  1U6Z A;  3CCG A;  4QQY A;  4N6W A;  4QG4 A;  3M1T A;  4Q2C A;  4ZWG A;  4QFX A;  4TO6 A;  4MLM A;  3GW7 A;  1VJ7 A;  3IRH A;  4TO4 A;  4R8Z A;  5TK6 A;  4RXQ A;  4BZB A;  4TNR A;  5TK8 A;  5AO1 A;  1VQR A;  3KQ5 A;  4MCW A;  4QG1 A;  5TKA A;  3HC1 A;  3MEM A;  4Q2D A;  5AO4 A;  2CQZ A;  4TO2 A;  4L1J B;  4RXO A;  4TNP A;  3S4L A;  2FLO A;  2DQB A;  3I7A A;  4MZ7 A;  4TO5 A;  3NR1 A;  4TNZ A;  4BZC A;  4X9E A;  4QG0 A;  2Q14 A;  4QQZ A;  3TM8 A;  4QQX A;  1XX7 A;  3TMD A;  1YNB A;  3SK9 A;  4Q7H A;  4DMB A;  3SKD A;  3P3Q A;  2HEK A;  4TO3 A;  2O08 A;  4TNY A;  5AO2 A;  4N71 A;  3BG2 A;  4RXR A;  4LRL A;  3MZO A;  4ZWE A; 
#chains in the Genus database with same CATH homology
 2PQ7 A;  4TO0 A;  4TNQ A;  4QG2 A;  2O6I A;  4TO1 A;  5AO0 A;  4L1J A;  3HI0 A;  4QFZ A;  3KH1 A;  4MDZ A;  4L7W A;  5TK7 A;  3RF0 A;  4QFY A;  3NQW A;  2OGI A;  2PGS A;  3TMC A;  4RXP A;  4QQW A;  2PAR A;  4ME4 A;  5TK9 A;  2PAQ A;  4L7E A;  2GZ4 A;  2PAU A;  5AO3 A;  4MLN A;  4TNX A;  3U1N A;  3TMB A;  3LJX A;  4XDS A;  4RXS A;  1YOY A;  1U6Z A;  3CCG A;  4QQY A;  4N6W A;  4QG4 A;  3M1T A;  4Q2C A;  4ZWG A;  4QFX A;  4TO6 A;  4MLM A;  3GW7 A;  1VJ7 A;  3IRH A;  4TO4 A;  4R8Z A;  5TK6 A;  4RXQ A;  4BZB A;  4TNR A;  5TK8 A;  5AO1 A;  1VQR A;  3KQ5 A;  4MCW A;  4QG1 A;  5TKA A;  3HC1 A;  3MEM A;  4Q2D A;  5AO4 A;  2CQZ A;  4TO2 A;  4L1J B;  4RXO A;  4TNP A;  3S4L A;  2FLO A;  2DQB A;  3I7A A;  4MZ7 A;  4TO5 A;  3NR1 A;  4TNZ A;  4BZC A;  4X9E A;  4QG0 A;  2Q14 A;  4QQZ A;  3TM8 A;  4QQX A;  1XX7 A;  3TMD A;  1YNB A;  3SK9 A;  4Q7H A;  4DMB A;  3SKD A;  3P3Q A;  2HEK A;  4TO3 A;  2O08 A;  4TNY A;  5AO2 A;  4N71 A;  3BG2 A;  4RXR A;  4LRL A;  3MZO A;  4ZWE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PARA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations