The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
120
|
sequence length |
415
|
structure length |
410
|
Chain Sequence |
NLQCIDVDNEDLFFIADKNSFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFTDENTIFQYLYSQTFPLDIRDISLTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFAGWVKQIVNDFVIEANKSNTDISLIVPYIGLALNVGNETAKGNFENAFEIAGASILLEFIPELLIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKYN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
BOTULINUM NEUROTOXIN B LIGHT CHAIN
|
| publication title |
Structure and Activity of a Functional Derivative of Clostridium Botulinum Neurotoxin B.
pubmed doi rcsb |
| source organism |
Clostridium botulinum
|
| total genus |
120
|
| structure length |
410
|
| sequence length |
415
|
| ec nomenclature |
ec
3.4.24.69: Bontoxilysin. |
| pdb deposition date | 2010-06-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF07952 | Toxin_trans | Clostridium neurotoxin, Translocation domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Clostridium botulinum neurotoxin B, "coiled-coil" domain | Clostridium botulinum neurotoxin b, "coiled-coil" domain |
#chains in the Genus database with same CATH superfamily 3V0A B; 3V0B B; 4ZKT B; 1S0F A; 5BQN A; 3ZUS A; 1F31 A; 1G9C A; 3ZUR A; 3VUO A; 2W2D B; 1S0B A; 3V0A A; 3V0B A; 3FFZ A; 2NYY A; 1G9A A; 2NP0 A; 3BTA A; 1G9B A; 3ZUQ A; 1S0D A; 1S0C A; 1S0E A; 1S0G A; 2XHL B; 1I1E A; 2NZ9 A; 5BQM B; 1G9D A; 1EPW A; #chains in the Genus database with same CATH topology 3V0A B; 3V0B B; 4ZKT B; 1S0F A; 5BQN A; 3ZUS A; 1F31 A; 1G9C A; 3ZUR A; 3VUO A; 2W2D B; 1S0B A; 3V0A A; 3V0B A; 3FFZ A; 2NYY A; 1G9A A; 2NP0 A; 3BTA A; 1G9B A; 3ZUQ A; 1S0D A; 1S0C A; 1S0E A; 1S0G A; 2XHL B; 1I1E A; 2NZ9 A; 5BQM B; 1G9D A; 1EPW A; #chains in the Genus database with same CATH homology 3V0A B; 3V0B B; 4ZKT B; 1S0F A; 5BQN A; 3ZUS A; 1F31 A; 1G9C A; 3ZUR A; 3VUO A; 2W2D B; 1S0B A; 3V0A A; 3V0B A; 3FFZ A; 2NYY A; 1G9A A; 2NP0 A; 3BTA A; 1G9B A; 3ZUQ A; 1S0D A; 1S0C A; 1S0E A; 1S0G A; 2XHL B; 1I1E A; 2NZ9 A; 5BQM B; 1G9D A; 1EPW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
