3GW7 | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	235
structure length	215
Chain Sequence	QHWQAQFENWLKNHVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSQRSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEGVDHKVIDAFSSAGLEHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 215 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli k-12
publication title	Crystal structure of a metal-dependent phosphohydrolase with conserved HD domain (yedJ) from Escherichia coli in complex with nickel ions. Northeast Structural Genomics Consortium Target ER63 rcsb
molecule keywords	Uncharacterized protein yedJ
total genus	43
structure length	215
sequence length	235
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-03-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01966	HD	HD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.50	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	3gw7A00

3GW7A
chains in the Genus database with same CATH superfamily

4N71A 1U6ZA 4TO0A 4RXSA 2PAUA 3MZOA 4TO6A 4QQZA 4TNPA 4QG1A 4X9EA 2PQ7A 3LJXA 4QFYA 5AO1A 4QG0A 4R8ZA 2PGSA 4LRLA 4MLMA 3BG2A 4L1JB 3KQ5A 4QG4A 4L7WA 4MDZA 3RF0A 4Q7HA 4TO1A 2CQZA 4ZWEA 5TKAA 4N6WA 3S4LA 3SKDA 4QG2A 4L1JA 5AO3A 4TO4A 3GW7A 4BZCA 5TK6A 3KH1A 4RXQA 3HC1A 2PARA 4TO5A 4QQWA 4Q2CA 4TO2A 4TO3A 4TNYA 3CCGA 5AO4A 5TK7A 3P3QA 4RXPA 4TNQA 3TM8A 2HEKA 2OGIA 3HI0A 3I7AA 4MCWA 1XX7A 2O08A 4L7EA 4MZ7A 5TK9A 2FLOA 2GZ4A 4ME4A 4TNZA 3M1TA 3TMBA 4QFZA 1VQRA 4QQXA 3NR1A 4ZWGA 4QQYA 4MLNA 2DQBA 4XDSA 5AO0A 4TNXA 4RXOA 4DMBA 1YNBA 3SK9A 2O6IA 5AO2A 4RXRA 3TMDA 3TMCA 4BZBA 2PAQA 1VJ7A 3IRHA 3NQWA 4QFXA 2Q14A 3U1NA 3MEMA 1YOYA 5TK8A 4TNRA 4Q2DA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3GW7 A; 
#chains in the Genus database with same CATH topology
 4N71 A;  1U6Z A;  4TO0 A;  4RXS A;  2PAU A;  3MZO A;  4TO6 A;  4QQZ A;  4TNP A;  4QG1 A;  4X9E A;  2PQ7 A;  3LJX A;  4QFY A;  5AO1 A;  4QG0 A;  4R8Z A;  2PGS A;  4LRL A;  4MLM A;  3BG2 A;  4L1J B;  3KQ5 A;  4QG4 A;  4L7W A;  4MDZ A;  3RF0 A;  4Q7H A;  4TO1 A;  2CQZ A;  4ZWE A;  5TKA A;  4N6W A;  3S4L A;  3SKD A;  4QG2 A;  4L1J A;  5AO3 A;  4TO4 A;  3GW7 A;  4BZC A;  5TK6 A;  3KH1 A;  4RXQ A;  3HC1 A;  2PAR A;  4TO5 A;  4QQW A;  4Q2C A;  4TO2 A;  4TO3 A;  4TNY A;  3CCG A;  5AO4 A;  5TK7 A;  3P3Q A;  4RXP A;  4TNQ A;  3TM8 A;  2HEK A;  2OGI A;  3HI0 A;  3I7A A;  4MCW A;  1XX7 A;  2O08 A;  4L7E A;  4MZ7 A;  5TK9 A;  2FLO A;  2GZ4 A;  4ME4 A;  4TNZ A;  3M1T A;  3TMB A;  4QFZ A;  1VQR A;  4QQX A;  3NR1 A;  4ZWG A;  4QQY A;  4MLN A;  2DQB A;  4XDS A;  5AO0 A;  4TNX A;  4RXO A;  4DMB A;  1YNB A;  3SK9 A;  2O6I A;  5AO2 A;  4RXR A;  3TMD A;  3TMC A;  4BZB A;  2PAQ A;  1VJ7 A;  3IRH A;  3NQW A;  4QFX A;  2Q14 A;  3U1N A;  3MEM A;  1YOY A;  5TK8 A;  4TNR A;  4Q2D A; 
#chains in the Genus database with same CATH homology
 4N71 A;  1U6Z A;  4TO0 A;  4RXS A;  2PAU A;  3MZO A;  4TO6 A;  4QQZ A;  4TNP A;  4QG1 A;  4X9E A;  2PQ7 A;  3LJX A;  4QFY A;  5AO1 A;  4QG0 A;  4R8Z A;  2PGS A;  4LRL A;  4MLM A;  3BG2 A;  4L1J B;  3KQ5 A;  4QG4 A;  4L7W A;  4MDZ A;  3RF0 A;  4Q7H A;  4TO1 A;  2CQZ A;  4ZWE A;  5TKA A;  4N6W A;  3S4L A;  3SKD A;  4QG2 A;  4L1J A;  5AO3 A;  4TO4 A;  3GW7 A;  4BZC A;  5TK6 A;  3KH1 A;  4RXQ A;  3HC1 A;  2PAR A;  4TO5 A;  4QQW A;  4Q2C A;  4TO2 A;  4TO3 A;  4TNY A;  3CCG A;  5AO4 A;  5TK7 A;  3P3Q A;  4RXP A;  4TNQ A;  3TM8 A;  2HEK A;  2OGI A;  3HI0 A;  3I7A A;  4MCW A;  1XX7 A;  2O08 A;  4L7E A;  4MZ7 A;  5TK9 A;  2FLO A;  2GZ4 A;  4ME4 A;  4TNZ A;  3M1T A;  3TMB A;  4QFZ A;  1VQR A;  4QQX A;  3NR1 A;  4ZWG A;  4QQY A;  4MLN A;  2DQB A;  4XDS A;  5AO0 A;  4TNX A;  4RXO A;  4DMB A;  1YNB A;  3SK9 A;  2O6I A;  5AO2 A;  4RXR A;  3TMD A;  3TMC A;  4BZB A;  2PAQ A;  1VJ7 A;  3IRH A;  3NQW A;  4QFX A;  2Q14 A;  3U1N A;  3MEM A;  1YOY A;  5TK8 A;  4TNR A;  4Q2D A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GW7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations