3NR1A

A metazoan ortholog of spot hydrolyzes ppgpp and plays a role in starvation responses
Total Genus 70
20406080100120140160010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
178
structure length
178
Chain Sequence
GSEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQRGLTI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-19)AH3 (52-60)O1 (67-69)AH5 (71-78)TI1 (19-22)EMPTYAH4 (62-66)AH10 (162-174)AH2 (33-46)AH7 (97-107)AH9 (140-157)AH8 (113-132)TII2 (157-160)TII1 (135-138)AH6 (80-89)TI3 (92-95)3H1 (108-110)TI2 (26-29)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses
pubmed doi rcsb
molecule keywords HD domain-containing protein 3
total genus 70
structure length 178
sequence length 178
chains with identical sequence B
ec nomenclature ec 3.1.7.2: Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase.
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13328 HD_4 HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 3nr1A00
2PGSA 4X9EA 4TNQA 3U1NA 5TK7A 1VJ7A 1YOYA 4L1JB 4Q7HA 4XDSA 1XX7A 2PAQA 4TO1A 4TO6A 5TK8A 2O6IA 3MZOA 4R8ZA 1YNBA 4RXRA 5AO3A 4ZWGA 5TKAA 2PAUA 3KH1A 2Q14A 3M1TA 2HEKA 4N6WA 3HC1A 2CQZA 2O08A 2PARA 3NR1A 1VQRA 4QG4A 3TMDA 4TNRA 4DMBA 4MDZA 4MLMA 5AO1A 2OGIA 5AO2A 3P3QA 4QG2A 4BZCA 4BZBA 4L1JA 1U6ZA 5AO0A 4TNZA 4TNYA 3BG2A 4TO5A 4QG0A 3IRHA 2GZ4A 4RXQA 4N71A 4L7EA 3TMBA 3MEMA 4TO0A 4ME4A 4QG1A 4TO4A 3TM8A 4TNPA 3NQWA 4QFZA 4ZWEA 3TMCA 4MLNA 4QFYA 4MCWA 4RXPA 4MZ7A 4TNXA 5AO4A 3RF0A 4TO2A 5TK6A 4QFXA 4RXOA 4TO3A 3I7AA 2FLOA 3CCGA 2PQ7A 3LJXA 4LRLA 4RXSA 2DQBA 5TK9A 3HI0A 4L7WA
chains in the Genus database with same CATH superfamily
2PGSA 4X9EA 4TNQA 3U1NA 5TK7A 1VJ7A 1YOYA 4L1JB 4Q7HA 4XDSA 1XX7A 2PAQA 4TO1A 3GW7A 4TO6A 5TK8A 2O6IA 3MZOA 4R8ZA 1YNBA 3KQ5A 4RXRA 5AO3A 4ZWGA 5TKAA 2PAUA 3KH1A 2Q14A 3SK9A 3M1TA 2HEKA 4N6WA 3HC1A 2CQZA 2O08A 2PARA 3NR1A 1VQRA 4Q2CA 3SKDA 4QG4A 3TMDA 4TNRA 4QQYA 4DMBA 4MDZA 4MLMA 5AO1A 2OGIA 5AO2A 3P3QA 4QG2A 4BZCA 4BZBA 4Q2DA 4L1JA 1U6ZA 5AO0A 4TNZA 4TNYA 3BG2A 4TO5A 4QG0A 3S4LA 3IRHA 2GZ4A 4QQZA 4RXQA 4N71A 4L7EA 3TMBA 3MEMA 4TO0A 4ME4A 4QG1A 4TO4A 3TM8A 4TNPA 3NQWA 4QFZA 4ZWEA 3TMCA 4MLNA 4QQXA 4QFYA 4MCWA 4RXPA 4MZ7A 4TNXA 5AO4A 3RF0A 4TO2A 5TK6A 4QFXA 4RXOA 4TO3A 3I7AA 2FLOA 3CCGA 2PQ7A 3LJXA 4QQWA 4LRLA 4RXSA 2DQBA 5TK9A 3HI0A 4L7WA
chains in the Genus database with same CATH topology
2PGSA 4X9EA 4TNQA 3U1NA 5TK7A 1VJ7A 1YOYA 4L1JB 4Q7HA 4XDSA 1XX7A 2PAQA 4TO1A 3GW7A 4TO6A 5TK8A 2O6IA 3MZOA 4R8ZA 1YNBA 3KQ5A 4RXRA 5AO3A 4ZWGA 5TKAA 2PAUA 3KH1A 2Q14A 3SK9A 3M1TA 2HEKA 4N6WA 3HC1A 2CQZA 2O08A 2PARA 3NR1A 1VQRA 4Q2CA 3SKDA 4QG4A 3TMDA 4TNRA 4QQYA 4DMBA 4MDZA 4MLMA 5AO1A 2OGIA 5AO2A 3P3QA 4QG2A 4BZCA 4BZBA 4Q2DA 4L1JA 1U6ZA 5AO0A 4TNZA 4TNYA 3BG2A 4TO5A 4QG0A 3S4LA 3IRHA 2GZ4A 4QQZA 4RXQA 4N71A 4L7EA 3TMBA 3MEMA 4TO0A 4ME4A 4QG1A 4TO4A 3TM8A 4TNPA 3NQWA 4QFZA 4ZWEA 3TMCA 4MLNA 4QQXA 4QFYA 4MCWA 4RXPA 4MZ7A 4TNXA 5AO4A 3RF0A 4TO2A 5TK6A 4QFXA 4RXOA 4TO3A 3I7AA 2FLOA 3CCGA 2PQ7A 3LJXA 4QQWA 4LRLA 4RXSA 2DQBA 5TK9A 3HI0A 4L7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PGS A;  4X9E A;  4TNQ A;  3U1N A;  5TK7 A;  1VJ7 A;  1YOY A;  4L1J B;  4Q7H A;  4XDS A;  1XX7 A;  2PAQ A;  4TO1 A;  4TO6 A;  5TK8 A;  2O6I A;  3MZO A;  4R8Z A;  1YNB A;  4RXR A;  5AO3 A;  4ZWG A;  5TKA A;  2PAU A;  3KH1 A;  2Q14 A;  3M1T A;  2HEK A;  4N6W A;  3HC1 A;  2CQZ A;  2O08 A;  2PAR A;  3NR1 A;  1VQR A;  4QG4 A;  3TMD A;  4TNR A;  4DMB A;  4MDZ A;  4MLM A;  5AO1 A;  2OGI A;  5AO2 A;  3P3Q A;  4QG2 A;  4BZC A;  4BZB A;  4L1J A;  1U6Z A;  5AO0 A;  4TNZ A;  4TNY A;  3BG2 A;  4TO5 A;  4QG0 A;  3IRH A;  2GZ4 A;  4RXQ A;  4N71 A;  4L7E A;  3TMB A;  3MEM A;  4TO0 A;  4ME4 A;  4QG1 A;  4TO4 A;  3TM8 A;  4TNP A;  3NQW A;  4QFZ A;  4ZWE A;  3TMC A;  4MLN A;  4QFY A;  4MCW A;  4RXP A;  4MZ7 A;  4TNX A;  5AO4 A;  3RF0 A;  4TO2 A;  5TK6 A;  4QFX A;  4RXO A;  4TO3 A;  3I7A A;  2FLO A;  3CCG A;  2PQ7 A;  3LJX A;  4LRL A;  4RXS A;  2DQB A;  5TK9 A;  3HI0 A;  4L7W A; 
#chains in the Genus database with same CATH topology
 2PGS A;  4X9E A;  4TNQ A;  3U1N A;  5TK7 A;  1VJ7 A;  1YOY A;  4L1J B;  4Q7H A;  4XDS A;  1XX7 A;  2PAQ A;  4TO1 A;  3GW7 A;  4TO6 A;  5TK8 A;  2O6I A;  3MZO A;  4R8Z A;  1YNB A;  3KQ5 A;  4RXR A;  5AO3 A;  4ZWG A;  5TKA A;  2PAU A;  3KH1 A;  2Q14 A;  3SK9 A;  3M1T A;  2HEK A;  4N6W A;  3HC1 A;  2CQZ A;  2O08 A;  2PAR A;  3NR1 A;  1VQR A;  4Q2C A;  3SKD A;  4QG4 A;  3TMD A;  4TNR A;  4QQY A;  4DMB A;  4MDZ A;  4MLM A;  5AO1 A;  2OGI A;  5AO2 A;  3P3Q A;  4QG2 A;  4BZC A;  4BZB A;  4Q2D A;  4L1J A;  1U6Z A;  5AO0 A;  4TNZ A;  4TNY A;  3BG2 A;  4TO5 A;  4QG0 A;  3S4L A;  3IRH A;  2GZ4 A;  4QQZ A;  4RXQ A;  4N71 A;  4L7E A;  3TMB A;  3MEM A;  4TO0 A;  4ME4 A;  4QG1 A;  4TO4 A;  3TM8 A;  4TNP A;  3NQW A;  4QFZ A;  4ZWE A;  3TMC A;  4MLN A;  4QQX A;  4QFY A;  4MCW A;  4RXP A;  4MZ7 A;  4TNX A;  5AO4 A;  3RF0 A;  4TO2 A;  5TK6 A;  4QFX A;  4RXO A;  4TO3 A;  3I7A A;  2FLO A;  3CCG A;  2PQ7 A;  3LJX A;  4QQW A;  4LRL A;  4RXS A;  2DQB A;  5TK9 A;  3HI0 A;  4L7W A; 
#chains in the Genus database with same CATH homology
 2PGS A;  4X9E A;  4TNQ A;  3U1N A;  5TK7 A;  1VJ7 A;  1YOY A;  4L1J B;  4Q7H A;  4XDS A;  1XX7 A;  2PAQ A;  4TO1 A;  3GW7 A;  4TO6 A;  5TK8 A;  2O6I A;  3MZO A;  4R8Z A;  1YNB A;  3KQ5 A;  4RXR A;  5AO3 A;  4ZWG A;  5TKA A;  2PAU A;  3KH1 A;  2Q14 A;  3SK9 A;  3M1T A;  2HEK A;  4N6W A;  3HC1 A;  2CQZ A;  2O08 A;  2PAR A;  3NR1 A;  1VQR A;  4Q2C A;  3SKD A;  4QG4 A;  3TMD A;  4TNR A;  4QQY A;  4DMB A;  4MDZ A;  4MLM A;  5AO1 A;  2OGI A;  5AO2 A;  3P3Q A;  4QG2 A;  4BZC A;  4BZB A;  4Q2D A;  4L1J A;  1U6Z A;  5AO0 A;  4TNZ A;  4TNY A;  3BG2 A;  4TO5 A;  4QG0 A;  3S4L A;  3IRH A;  2GZ4 A;  4QQZ A;  4RXQ A;  4N71 A;  4L7E A;  3TMB A;  3MEM A;  4TO0 A;  4ME4 A;  4QG1 A;  4TO4 A;  3TM8 A;  4TNP A;  3NQW A;  4QFZ A;  4ZWE A;  3TMC A;  4MLN A;  4QQX A;  4QFY A;  4MCW A;  4RXP A;  4MZ7 A;  4TNX A;  5AO4 A;  3RF0 A;  4TO2 A;  5TK6 A;  4QFX A;  4RXO A;  4TO3 A;  3I7A A;  2FLO A;  3CCG A;  2PQ7 A;  3LJX A;  4QQW A;  4LRL A;  4RXS A;  2DQB A;  5TK9 A;  3HI0 A;  4L7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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