3P3Q | Genus

Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	258
structure length	240
Chain Sequence	MLCDSLPTASRTAAAILNLAQSEDVTAEALAQLIQTDPALTGRILRFANAPAQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDEGRCEAFDYAAYWQKSLARAVALQSITAQAVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELTRMLLTDWGFPQVFIDALQLSQQDRTGRFARQLTLAQHIADHRLALSPLLRAEARRCGLGDEDLARLLAD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Methylococcus capsulatus
publication title	Northeast Structural Genomics Consortium Target McR175M rcsb
molecule keywords	MmoQ
total genus	84
structure length	240
sequence length	258
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-10-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08668	HDOD	HDOD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	3p3qA00

4N71A 4Q7HA 4TNYA 4QFZA 4RXSA 3HC1A 4QG1A 2PGSA 5TK7A 3MZOA 2GZ4A 1VQRA 4TO0A 4ZWEA 5AO2A 3P3QA 3LJXA 4RXPA 5TK9A 4RXOA 4N6WA 3HI0A 2HEKA 3M1TA 4QG4A 3BG2A 3I7AA 4TO5A 4DMBA 4MZ7A 3NQWA 2PAQA 1VJ7A 4BZCA 5AO4A 3IRHA 4RXQA 4ME4A 2PQ7A 2FLOA 4MCWA 4LRLA 4ZWGA 3MEMA 4MLNA 4TO3A 2DQBA 5TK8A 1YOYA 3KH1A 2O08A 4MLMA 4R8ZA 3TM8A 3TMDA 4RXRA 3CCGA 5AO3A 4X9EA 2O6IA 3U1NA 2Q14A 3NR1A 4L1JB 1XX7A 4QFXA 4TNPA 5TKAA 4BZBA 4TO1A 4L7EA 4TNZA 4TO4A 4MDZA 3RF0A 3TMBA 5TK6A 3TMCA 2OGIA 4QG0A 4TNXA 1YNBA 4TO2A 5AO1A 4QFYA 4TNQA 1U6ZA 5AO0A 2PAUA 4TO6A 4TNRA 4L1JA 4QG2A 2PARA 4L7WA 4XDSA 2CQZA
chains in the Genus database with same CATH superfamily

4N71A 4Q7HA 4QQZA 4TNYA 4QFZA 4RXSA 3HC1A 4QG1A 2PGSA 5TK7A 4Q2DA 3MZOA 2GZ4A 4Q2CA 1VQRA 4TO0A 4ZWEA 5AO2A 3P3QA 3LJXA 4RXPA 5TK9A 4RXOA 4N6WA 3HI0A 2HEKA 4QQWA 3M1TA 4QG4A 3BG2A 3I7AA 4TO5A 4DMBA 4MZ7A 3NQWA 2PAQA 1VJ7A 4BZCA 3KQ5A 3GW7A 5AO4A 3IRHA 4RXQA 4ME4A 2PQ7A 2FLOA 4MCWA 4LRLA 4ZWGA 3MEMA 4MLNA 4TO3A 2DQBA 5TK8A 1YOYA 3KH1A 2O08A 4MLMA 3SK9A 4R8ZA 3TM8A 3TMDA 4RXRA 3CCGA 5AO3A 4X9EA 3SKDA 2O6IA 3U1NA 2Q14A 3NR1A 4L1JB 1XX7A 4QFXA 4TNPA 5TKAA 4BZBA 4TO1A 4QQXA 4L7EA 4TNZA 4TO4A 4MDZA 3RF0A 3TMBA 5TK6A 3TMCA 4QQYA 2OGIA 4QG0A 4TNXA 1YNBA 4TO2A 5AO1A 4QFYA 4TNQA 1U6ZA 5AO0A 2PAUA 4TO6A 4TNRA 4L1JA 4QG2A 2PARA 4L7WA 4XDSA 3S4LA 2CQZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4N71 A;  4Q7H A;  4TNY A;  4QFZ A;  4RXS A;  3HC1 A;  4QG1 A;  2PGS A;  5TK7 A;  3MZO A;  2GZ4 A;  1VQR A;  4TO0 A;  4ZWE A;  5AO2 A;  3P3Q A;  3LJX A;  4RXP A;  5TK9 A;  4RXO A;  4N6W A;  3HI0 A;  2HEK A;  3M1T A;  4QG4 A;  3BG2 A;  3I7A A;  4TO5 A;  4DMB A;  4MZ7 A;  3NQW A;  2PAQ A;  1VJ7 A;  4BZC A;  5AO4 A;  3IRH A;  4RXQ A;  4ME4 A;  2PQ7 A;  2FLO A;  4MCW A;  4LRL A;  4ZWG A;  3MEM A;  4MLN A;  4TO3 A;  2DQB A;  5TK8 A;  1YOY A;  3KH1 A;  2O08 A;  4MLM A;  4R8Z A;  3TM8 A;  3TMD A;  4RXR A;  3CCG A;  5AO3 A;  4X9E A;  2O6I A;  3U1N A;  2Q14 A;  3NR1 A;  4L1J B;  1XX7 A;  4QFX A;  4TNP A;  5TKA A;  4BZB A;  4TO1 A;  4L7E A;  4TNZ A;  4TO4 A;  4MDZ A;  3RF0 A;  3TMB A;  5TK6 A;  3TMC A;  2OGI A;  4QG0 A;  4TNX A;  1YNB A;  4TO2 A;  5AO1 A;  4QFY A;  4TNQ A;  1U6Z A;  5AO0 A;  2PAU A;  4TO6 A;  4TNR A;  4L1J A;  4QG2 A;  2PAR A;  4L7W A;  4XDS A;  2CQZ A; 
#chains in the Genus database with same CATH topology
 4N71 A;  4Q7H A;  4QQZ A;  4TNY A;  4QFZ A;  4RXS A;  3HC1 A;  4QG1 A;  2PGS A;  5TK7 A;  4Q2D A;  3MZO A;  2GZ4 A;  4Q2C A;  1VQR A;  4TO0 A;  4ZWE A;  5AO2 A;  3P3Q A;  3LJX A;  4RXP A;  5TK9 A;  4RXO A;  4N6W A;  3HI0 A;  2HEK A;  4QQW A;  3M1T A;  4QG4 A;  3BG2 A;  3I7A A;  4TO5 A;  4DMB A;  4MZ7 A;  3NQW A;  2PAQ A;  1VJ7 A;  4BZC A;  3KQ5 A;  3GW7 A;  5AO4 A;  3IRH A;  4RXQ A;  4ME4 A;  2PQ7 A;  2FLO A;  4MCW A;  4LRL A;  4ZWG A;  3MEM A;  4MLN A;  4TO3 A;  2DQB A;  5TK8 A;  1YOY A;  3KH1 A;  2O08 A;  4MLM A;  3SK9 A;  4R8Z A;  3TM8 A;  3TMD A;  4RXR A;  3CCG A;  5AO3 A;  4X9E A;  3SKD A;  2O6I A;  3U1N A;  2Q14 A;  3NR1 A;  4L1J B;  1XX7 A;  4QFX A;  4TNP A;  5TKA A;  4BZB A;  4TO1 A;  4QQX A;  4L7E A;  4TNZ A;  4TO4 A;  4MDZ A;  3RF0 A;  3TMB A;  5TK6 A;  3TMC A;  4QQY A;  2OGI A;  4QG0 A;  4TNX A;  1YNB A;  4TO2 A;  5AO1 A;  4QFY A;  4TNQ A;  1U6Z A;  5AO0 A;  2PAU A;  4TO6 A;  4TNR A;  4L1J A;  4QG2 A;  2PAR A;  4L7W A;  4XDS A;  3S4L A;  2CQZ A; 
#chains in the Genus database with same CATH homology
 4N71 A;  4Q7H A;  4QQZ A;  4TNY A;  4QFZ A;  4RXS A;  3HC1 A;  4QG1 A;  2PGS A;  5TK7 A;  4Q2D A;  3MZO A;  2GZ4 A;  4Q2C A;  1VQR A;  4TO0 A;  4ZWE A;  5AO2 A;  3P3Q A;  3LJX A;  4RXP A;  5TK9 A;  4RXO A;  4N6W A;  3HI0 A;  2HEK A;  4QQW A;  3M1T A;  4QG4 A;  3BG2 A;  3I7A A;  4TO5 A;  4DMB A;  4MZ7 A;  3NQW A;  2PAQ A;  1VJ7 A;  4BZC A;  3KQ5 A;  3GW7 A;  5AO4 A;  3IRH A;  4RXQ A;  4ME4 A;  2PQ7 A;  2FLO A;  4MCW A;  4LRL A;  4ZWG A;  3MEM A;  4MLN A;  4TO3 A;  2DQB A;  5TK8 A;  1YOY A;  3KH1 A;  2O08 A;  4MLM A;  3SK9 A;  4R8Z A;  3TM8 A;  3TMD A;  4RXR A;  3CCG A;  5AO3 A;  4X9E A;  3SKD A;  2O6I A;  3U1N A;  2Q14 A;  3NR1 A;  4L1J B;  1XX7 A;  4QFX A;  4TNP A;  5TKA A;  4BZB A;  4TO1 A;  4QQX A;  4L7E A;  4TNZ A;  4TO4 A;  4MDZ A;  3RF0 A;  3TMB A;  5TK6 A;  3TMC A;  4QQY A;  2OGI A;  4QG0 A;  4TNX A;  1YNB A;  4TO2 A;  5AO1 A;  4QFY A;  4TNQ A;  1U6Z A;  5AO0 A;  2PAU A;  4TO6 A;  4TNR A;  4L1J A;  4QG2 A;  2PAR A;  4L7W A;  4XDS A;  3S4L A;  2CQZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3P3QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations