The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
126
|
sequence length |
309
|
structure length |
309
|
Chain Sequence |
HMDYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKDKKLRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNNAEEVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGLREKDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQHLNDILKGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
pubmed doi rcsb |
| molecule tags |
Hydrolase,signaling protein
|
| source organism |
Bdellovibrio bacteriovorus
|
| molecule keywords |
Uncharacterized protein
|
| total genus |
126
|
| structure length |
309
|
| sequence length |
309
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-08-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13487 | HD_5 | HD domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Hypothetical protein af1432 | Hypothetical protein af1432 |
#chains in the Genus database with same CATH superfamily 5AO4 A; 4TNY A; 4QFZ A; 1YOY A; 4BZB A; 1VJ7 A; 3TM8 A; 4TNP A; 4RXP A; 4QG1 A; 4TO5 A; 2HEK A; 5AO3 A; 5AO0 A; 3HC1 A; 1YNB A; 5AO2 A; 4MZ7 A; 3MEM A; 3U1N A; 4BZC A; 2OGI A; 2DQB A; 3TMB A; 4QG2 A; 4L7W A; 4TNR A; 3I7A A; 3HI0 A; 2PAQ A; 4QG4 A; 4DMB A; 2PQ7 A; 3TMD A; 4ME4 A; 3MZO A; 1XX7 A; 4L7E A; 2PGS A; 4N6W A; 4RXO A; 1U6Z A; 4TO2 A; 4RXR A; 4TO4 A; 4TNX A; 4X9E A; 4TNZ A; 4RXS A; 4QFY A; 3LJX A; 3IRH A; 2O6I A; 2PAR A; 4MDZ A; 4Q7H A; 3NR1 A; 5AO1 A; 5TK7 A; 4TNQ A; 4TO6 A; 3CCG A; 4L1J B; 4TO0 A; 4ZWG A; 4R8Z A; 4LRL A; 1VQR A; 2O08 A; 3NQW A; 4N71 A; 4MLN A; 2FLO A; 4QFX A; 4RXQ A; 5TK8 A; 3P3Q A; 2CQZ A; 4MCW A; 5TKA A; 3KH1 A; 2PAU A; 3TMC A; 4XDS A; 5TK6 A; 3M1T A; 4TO3 A; 3RF0 A; 2Q14 A; 4ZWE A; 4L1J A; 4TO1 A; 4MLM A; 4QG0 A; 5TK9 A; 2GZ4 A; 3BG2 A; #chains in the Genus database with same CATH topology 5AO4 A; 4TNY A; 4QFZ A; 1YOY A; 4BZB A; 1VJ7 A; 3TM8 A; 4TNP A; 4RXP A; 4QG1 A; 4TO5 A; 2HEK A; 5AO3 A; 5AO0 A; 3HC1 A; 4Q2D A; 1YNB A; 5AO2 A; 4MZ7 A; 3MEM A; 3U1N A; 4BZC A; 2OGI A; 2DQB A; 3TMB A; 3GW7 A; 4QG2 A; 4L7W A; 4TNR A; 3I7A A; 3HI0 A; 2PAQ A; 3KQ5 A; 4QG4 A; 4DMB A; 2PQ7 A; 3TMD A; 4ME4 A; 3MZO A; 1XX7 A; 4L7E A; 2PGS A; 4N6W A; 4RXO A; 1U6Z A; 4QQY A; 4TO2 A; 4RXR A; 4TO4 A; 4TNX A; 4X9E A; 4TNZ A; 4RXS A; 4QFY A; 3LJX A; 3IRH A; 2O6I A; 2PAR A; 4MDZ A; 4Q7H A; 3NR1 A; 5AO1 A; 5TK7 A; 4TNQ A; 4TO6 A; 3CCG A; 4L1J B; 4Q2C A; 4TO0 A; 4ZWG A; 4R8Z A; 4LRL A; 1VQR A; 2O08 A; 3NQW A; 4N71 A; 4MLN A; 2FLO A; 4QFX A; 4RXQ A; 5TK8 A; 3P3Q A; 4QQZ A; 2CQZ A; 4MCW A; 3SKD A; 5TKA A; 4QQW A; 3SK9 A; 3KH1 A; 2PAU A; 3TMC A; 4XDS A; 5TK6 A; 3M1T A; 4TO3 A; 3RF0 A; 2Q14 A; 4ZWE A; 4L1J A; 3S4L A; 4TO1 A; 4MLM A; 4QQX A; 4QG0 A; 5TK9 A; 2GZ4 A; 3BG2 A; #chains in the Genus database with same CATH homology 5AO4 A; 4TNY A; 4QFZ A; 1YOY A; 4BZB A; 1VJ7 A; 3TM8 A; 4TNP A; 4RXP A; 4QG1 A; 4TO5 A; 2HEK A; 5AO3 A; 5AO0 A; 3HC1 A; 4Q2D A; 1YNB A; 5AO2 A; 4MZ7 A; 3MEM A; 3U1N A; 4BZC A; 2OGI A; 2DQB A; 3TMB A; 3GW7 A; 4QG2 A; 4L7W A; 4TNR A; 3I7A A; 3HI0 A; 2PAQ A; 3KQ5 A; 4QG4 A; 4DMB A; 2PQ7 A; 3TMD A; 4ME4 A; 3MZO A; 1XX7 A; 4L7E A; 2PGS A; 4N6W A; 4RXO A; 1U6Z A; 4QQY A; 4TO2 A; 4RXR A; 4TO4 A; 4TNX A; 4X9E A; 4TNZ A; 4RXS A; 4QFY A; 3LJX A; 3IRH A; 2O6I A; 2PAR A; 4MDZ A; 4Q7H A; 3NR1 A; 5AO1 A; 5TK7 A; 4TNQ A; 4TO6 A; 3CCG A; 4L1J B; 4Q2C A; 4TO0 A; 4ZWG A; 4R8Z A; 4LRL A; 1VQR A; 2O08 A; 3NQW A; 4N71 A; 4MLN A; 2FLO A; 4QFX A; 4RXQ A; 5TK8 A; 3P3Q A; 4QQZ A; 2CQZ A; 4MCW A; 3SKD A; 5TKA A; 4QQW A; 3SK9 A; 3KH1 A; 2PAU A; 3TMC A; 4XDS A; 5TK6 A; 3M1T A; 4TO3 A; 3RF0 A; 2Q14 A; 4ZWE A; 4L1J A; 3S4L A; 4TO1 A; 4MLM A; 4QQX A; 4QG0 A; 5TK9 A; 2GZ4 A; 3BG2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
