4DMBA

X-ray structure of human hepatitus c virus ns5a-transactivated protein 2 at the resolution 1.9a, northeast structural genomics consortium (nesg) target hr6723
Total Genus 74
20406080100120140160180010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
188
structure length
188
Chain Sequence
GARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-26)AH2 (33-38)AH6 (134-158)3H1 (27-29)EMPTYTIV1 (40-43)TI1 (45-48)TIV2 (46-49)AH5 (115-130)TIV3 (47-51)TIV4 (48-52)TI2 (62-65)AH3 (67-77)TI3 (80-83)TIV6 (81-84)TIV7 (82-85)3H4 (110-112)AH4 (95-104)3H3 (105-108)TII1 (160-163)AH8 (178-199)TII2 (171-174)TIV5 (51-55)AH7 (164-170)3H2 (89-91)Updating...
connected with : NaN
molecule tags Immune system
source organism Homo sapiens
publication title Northeast Structural Genomics Consortium Target HR6723
rcsb
molecule keywords HD domain-containing protein 2
total genus 74
structure length 188
sequence length 188
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13023 HD_3 HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4dmbA00
5AO1A 3MEMA 4MZ7A 4TNXA 4TNRA 4Q7HA 5AO0A 3U1NA 4QFXA 4DMBA 4BZBA 4MDZA 4RXSA 3M1TA 3TMDA 4QG0A 4QG4A 2O6IA 2OGIA 5AO2A 5TK6A 4TO3A 4MLNA 3HC1A 4QFZA 2Q14A 5TK8A 3I7AA 4TNQA 2DQBA 1U6ZA 3KH1A 4TNZA 4TO6A 3MZOA 5TK9A 1YNBA 1VJ7A 3RF0A 4N71A 4L1JB 3NQWA 3IRHA 4TO2A 3LJXA 4TNYA 4BZCA 4R8ZA 4LRLA 4ZWGA 4RXRA 2O08A 2PAQA 3BG2A 5TKAA 4TO4A 4TO5A 4QG2A 4TNPA 4ZWEA 5TK7A 4RXQA 5AO4A 3NR1A 2PARA 4TO0A 4XDSA 1XX7A 3TM8A 2GZ4A 2HEKA 4L1JA 4MCWA 4TO1A 4X9EA 2PGSA 4MLMA 4ME4A 3TMCA 5AO3A 4L7EA 4QFYA 4QG1A 2PQ7A 3CCGA 2PAUA 4L7WA 2CQZA 3P3QA 1VQRA 4RXOA 4N6WA 2FLOA 3HI0A 1YOYA 3TMBA 4RXPA
chains in the Genus database with same CATH superfamily
5AO1A 3MEMA 4MZ7A 4TNXA 4TNRA 4Q7HA 5AO0A 3U1NA 4QFXA 3SK9A 4DMBA 4BZBA 4MDZA 4RXSA 3M1TA 3TMDA 4QQWA 4QG0A 4QG4A 2O6IA 2OGIA 5AO2A 5TK6A 4TO3A 4MLNA 3HC1A 4QFZA 2Q14A 5TK8A 3I7AA 4TNQA 2DQBA 1U6ZA 3KH1A 4TNZA 4TO6A 4QQYA 3MZOA 5TK9A 1YNBA 1VJ7A 4QQXA 3SKDA 4QQZA 3RF0A 4N71A 4L1JB 3NQWA 3IRHA 4TO2A 3LJXA 4TNYA 4BZCA 4R8ZA 4LRLA 4ZWGA 4Q2DA 4RXRA 2O08A 2PAQA 3BG2A 5TKAA 4TO4A 4TO5A 4QG2A 4TNPA 4ZWEA 5TK7A 4RXQA 5AO4A 3NR1A 2PARA 4TO0A 4XDSA 1XX7A 3TM8A 2GZ4A 2HEKA 4L1JA 4MCWA 4TO1A 4X9EA 2PGSA 4MLMA 4ME4A 4Q2CA 3TMCA 5AO3A 4L7EA 4QFYA 4QG1A 2PQ7A 3CCGA 2PAUA 4L7WA 2CQZA 3S4LA 3P3QA 1VQRA 4RXOA 4N6WA 2FLOA 3HI0A 1YOYA 3GW7A 3KQ5A 3TMBA 4RXPA
chains in the Genus database with same CATH topology
5AO1A 3MEMA 4MZ7A 4TNXA 4TNRA 4Q7HA 5AO0A 3U1NA 4QFXA 3SK9A 4DMBA 4BZBA 4MDZA 4RXSA 3M1TA 3TMDA 4QQWA 4QG0A 4QG4A 2O6IA 2OGIA 5AO2A 5TK6A 4TO3A 4MLNA 3HC1A 4QFZA 2Q14A 5TK8A 3I7AA 4TNQA 2DQBA 1U6ZA 3KH1A 4TNZA 4TO6A 4QQYA 3MZOA 5TK9A 1YNBA 1VJ7A 4QQXA 3SKDA 4QQZA 3RF0A 4N71A 4L1JB 3NQWA 3IRHA 4TO2A 3LJXA 4TNYA 4BZCA 4R8ZA 4LRLA 4ZWGA 4Q2DA 4RXRA 2O08A 2PAQA 3BG2A 5TKAA 4TO4A 4TO5A 4QG2A 4TNPA 4ZWEA 5TK7A 4RXQA 5AO4A 3NR1A 2PARA 4TO0A 4XDSA 1XX7A 3TM8A 2GZ4A 2HEKA 4L1JA 4MCWA 4TO1A 4X9EA 2PGSA 4MLMA 4ME4A 4Q2CA 3TMCA 5AO3A 4L7EA 4QFYA 4QG1A 2PQ7A 3CCGA 2PAUA 4L7WA 2CQZA 3S4LA 3P3QA 1VQRA 4RXOA 4N6WA 2FLOA 3HI0A 1YOYA 3GW7A 3KQ5A 3TMBA 4RXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AO1 A;  3MEM A;  4MZ7 A;  4TNX A;  4TNR A;  4Q7H A;  5AO0 A;  3U1N A;  4QFX A;  4DMB A;  4BZB A;  4MDZ A;  4RXS A;  3M1T A;  3TMD A;  4QG0 A;  4QG4 A;  2O6I A;  2OGI A;  5AO2 A;  5TK6 A;  4TO3 A;  4MLN A;  3HC1 A;  4QFZ A;  2Q14 A;  5TK8 A;  3I7A A;  4TNQ A;  2DQB A;  1U6Z A;  3KH1 A;  4TNZ A;  4TO6 A;  3MZO A;  5TK9 A;  1YNB A;  1VJ7 A;  3RF0 A;  4N71 A;  4L1J B;  3NQW A;  3IRH A;  4TO2 A;  3LJX A;  4TNY A;  4BZC A;  4R8Z A;  4LRL A;  4ZWG A;  4RXR A;  2O08 A;  2PAQ A;  3BG2 A;  5TKA A;  4TO4 A;  4TO5 A;  4QG2 A;  4TNP A;  4ZWE A;  5TK7 A;  4RXQ A;  5AO4 A;  3NR1 A;  2PAR A;  4TO0 A;  4XDS A;  1XX7 A;  3TM8 A;  2GZ4 A;  2HEK A;  4L1J A;  4MCW A;  4TO1 A;  4X9E A;  2PGS A;  4MLM A;  4ME4 A;  3TMC A;  5AO3 A;  4L7E A;  4QFY A;  4QG1 A;  2PQ7 A;  3CCG A;  2PAU A;  4L7W A;  2CQZ A;  3P3Q A;  1VQR A;  4RXO A;  4N6W A;  2FLO A;  3HI0 A;  1YOY A;  3TMB A;  4RXP A; 
#chains in the Genus database with same CATH topology
 5AO1 A;  3MEM A;  4MZ7 A;  4TNX A;  4TNR A;  4Q7H A;  5AO0 A;  3U1N A;  4QFX A;  3SK9 A;  4DMB A;  4BZB A;  4MDZ A;  4RXS A;  3M1T A;  3TMD A;  4QQW A;  4QG0 A;  4QG4 A;  2O6I A;  2OGI A;  5AO2 A;  5TK6 A;  4TO3 A;  4MLN A;  3HC1 A;  4QFZ A;  2Q14 A;  5TK8 A;  3I7A A;  4TNQ A;  2DQB A;  1U6Z A;  3KH1 A;  4TNZ A;  4TO6 A;  4QQY A;  3MZO A;  5TK9 A;  1YNB A;  1VJ7 A;  4QQX A;  3SKD A;  4QQZ A;  3RF0 A;  4N71 A;  4L1J B;  3NQW A;  3IRH A;  4TO2 A;  3LJX A;  4TNY A;  4BZC A;  4R8Z A;  4LRL A;  4ZWG A;  4Q2D A;  4RXR A;  2O08 A;  2PAQ A;  3BG2 A;  5TKA A;  4TO4 A;  4TO5 A;  4QG2 A;  4TNP A;  4ZWE A;  5TK7 A;  4RXQ A;  5AO4 A;  3NR1 A;  2PAR A;  4TO0 A;  4XDS A;  1XX7 A;  3TM8 A;  2GZ4 A;  2HEK A;  4L1J A;  4MCW A;  4TO1 A;  4X9E A;  2PGS A;  4MLM A;  4ME4 A;  4Q2C A;  3TMC A;  5AO3 A;  4L7E A;  4QFY A;  4QG1 A;  2PQ7 A;  3CCG A;  2PAU A;  4L7W A;  2CQZ A;  3S4L A;  3P3Q A;  1VQR A;  4RXO A;  4N6W A;  2FLO A;  3HI0 A;  1YOY A;  3GW7 A;  3KQ5 A;  3TMB A;  4RXP A; 
#chains in the Genus database with same CATH homology
 5AO1 A;  3MEM A;  4MZ7 A;  4TNX A;  4TNR A;  4Q7H A;  5AO0 A;  3U1N A;  4QFX A;  3SK9 A;  4DMB A;  4BZB A;  4MDZ A;  4RXS A;  3M1T A;  3TMD A;  4QQW A;  4QG0 A;  4QG4 A;  2O6I A;  2OGI A;  5AO2 A;  5TK6 A;  4TO3 A;  4MLN A;  3HC1 A;  4QFZ A;  2Q14 A;  5TK8 A;  3I7A A;  4TNQ A;  2DQB A;  1U6Z A;  3KH1 A;  4TNZ A;  4TO6 A;  4QQY A;  3MZO A;  5TK9 A;  1YNB A;  1VJ7 A;  4QQX A;  3SKD A;  4QQZ A;  3RF0 A;  4N71 A;  4L1J B;  3NQW A;  3IRH A;  4TO2 A;  3LJX A;  4TNY A;  4BZC A;  4R8Z A;  4LRL A;  4ZWG A;  4Q2D A;  4RXR A;  2O08 A;  2PAQ A;  3BG2 A;  5TKA A;  4TO4 A;  4TO5 A;  4QG2 A;  4TNP A;  4ZWE A;  5TK7 A;  4RXQ A;  5AO4 A;  3NR1 A;  2PAR A;  4TO0 A;  4XDS A;  1XX7 A;  3TM8 A;  2GZ4 A;  2HEK A;  4L1J A;  4MCW A;  4TO1 A;  4X9E A;  2PGS A;  4MLM A;  4ME4 A;  4Q2C A;  3TMC A;  5AO3 A;  4L7E A;  4QFY A;  4QG1 A;  2PQ7 A;  3CCG A;  2PAU A;  4L7W A;  2CQZ A;  3S4L A;  3P3Q A;  1VQR A;  4RXO A;  4N6W A;  2FLO A;  3HI0 A;  1YOY A;  3GW7 A;  3KQ5 A;  3TMB A;  4RXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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