4QQWA

Crystal structure of t. fusca cas3
Total Genus 298
100200300400500600700800900050100150200250300
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
298
sequence length
931
structure length
911
Chain Sequence
PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTDLPRSSTLALLHSMAWLNPDYAPAVLSNLGHRDPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSFHVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDEGAVLPTETGGREWLLDPCKGLIF
100200300400500600700800900800600400200
050100150200250Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Thermobifida fusca
publication title Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
pubmed doi rcsb
molecule keywords CRISPR-associated helicase, Cas3 family
total genus 298
structure length 911
sequence length 931
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00271 Helicase_C Helicase conserved C-terminal domain
A PF18019 HD_6 HD domain
A PF18395 Cas3_C Cas3 C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.30 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4qqwA01
4Q2DA 4Q2CA 4QQZA 4QQXA 3S4LA 4QQYA 4QQWA 3SKDA 3SK9A
chains in the Genus database with same CATH superfamily
2PAUA 3MZOA 5AO4A 3CCGA 2HEKA 4QFXA 4X9EA 4TO5A 1VQRA 4TO1A 4RXSA 5AO0A 1YNBA 2O6IA 4TO3A 3KH1A 4TNYA 1YOYA 4TO0A 4TNZA 3HC1A 4QG4A 4XDSA 3KQ5A 5TK7A 2O08A 4RXQA 4MLNA 2PARA 3I7AA 4ME4A 1VJ7A 4TNPA 4QQYA 3NQWA 4L7EA 3MEMA 4RXPA 3P3QA 3TMDA 4ZWEA 3S4LA 3NR1A 2DQBA 3IRHA 5AO2A 3SK9A 2OGIA 4MCWA 4MLMA 4N6WA 3RF0A 4L7WA 4TO6A 2FLOA 3GW7A 4QQXA 4TNXA 4L1JA 3SKDA 3U1NA 5TK8A 3TM8A 4Q2DA 4QFYA 5AO3A 1XX7A 5AO1A 4QFZA 4QQWA 4BZCA 4DMBA 3TMCA 4N71A 1U6ZA 2PGSA 4LRLA 4RXOA 3LJXA 5TK9A 3BG2A 2PQ7A 4Q7HA 4Q2CA 4ZWGA 4TO4A 4QQZA 4TO2A 2Q14A 2PAQA 4BZBA 4MDZA 3M1TA 4MZ7A 2CQZA 4R8ZA 3HI0A 3TMBA 2GZ4A 4QG1A 4TNQA 4QG0A 5TKAA 5TK6A 4TNRA 4L1JB 4RXRA 4QG2A
chains in the Genus database with same CATH topology
2PAUA 3MZOA 5AO4A 3CCGA 2HEKA 4QFXA 4X9EA 4TO5A 1VQRA 4TO1A 4RXSA 5AO0A 1YNBA 2O6IA 4TO3A 3KH1A 4TNYA 1YOYA 4TO0A 4TNZA 3HC1A 4QG4A 4XDSA 3KQ5A 5TK7A 2O08A 4RXQA 4MLNA 2PARA 3I7AA 4ME4A 1VJ7A 4TNPA 4QQYA 3NQWA 4L7EA 3MEMA 4RXPA 3P3QA 3TMDA 4ZWEA 3S4LA 3NR1A 2DQBA 3IRHA 5AO2A 3SK9A 2OGIA 4MCWA 4MLMA 4N6WA 3RF0A 4L7WA 4TO6A 2FLOA 3GW7A 4QQXA 4TNXA 4L1JA 3SKDA 3U1NA 5TK8A 3TM8A 4Q2DA 4QFYA 5AO3A 1XX7A 5AO1A 4QFZA 4QQWA 4BZCA 4DMBA 3TMCA 4N71A 1U6ZA 2PGSA 4LRLA 4RXOA 3LJXA 5TK9A 3BG2A 2PQ7A 4Q7HA 4Q2CA 4ZWGA 4TO4A 4QQZA 4TO2A 2Q14A 2PAQA 4BZBA 4MDZA 3M1TA 4MZ7A 2CQZA 4R8ZA 3HI0A 3TMBA 2GZ4A 4QG1A 4TNQA 4QG0A 5TKAA 5TK6A 4TNRA 4L1JB 4RXRA 4QG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q2D A;  4Q2C A;  4QQZ A;  4QQX A;  3S4L A;  4QQY A;  4QQW A;  3SKD A;  3SK9 A; 
#chains in the Genus database with same CATH topology
 2PAU A;  3MZO A;  5AO4 A;  3CCG A;  2HEK A;  4QFX A;  4X9E A;  4TO5 A;  1VQR A;  4TO1 A;  4RXS A;  5AO0 A;  1YNB A;  2O6I A;  4TO3 A;  3KH1 A;  4TNY A;  1YOY A;  4TO0 A;  4TNZ A;  3HC1 A;  4QG4 A;  4XDS A;  3KQ5 A;  5TK7 A;  2O08 A;  4RXQ A;  4MLN A;  2PAR A;  3I7A A;  4ME4 A;  1VJ7 A;  4TNP A;  4QQY A;  3NQW A;  4L7E A;  3MEM A;  4RXP A;  3P3Q A;  3TMD A;  4ZWE A;  3S4L A;  3NR1 A;  2DQB A;  3IRH A;  5AO2 A;  3SK9 A;  2OGI A;  4MCW A;  4MLM A;  4N6W A;  3RF0 A;  4L7W A;  4TO6 A;  2FLO A;  3GW7 A;  4QQX A;  4TNX A;  4L1J A;  3SKD A;  3U1N A;  5TK8 A;  3TM8 A;  4Q2D A;  4QFY A;  5AO3 A;  1XX7 A;  5AO1 A;  4QFZ A;  4QQW A;  4BZC A;  4DMB A;  3TMC A;  4N71 A;  1U6Z A;  2PGS A;  4LRL A;  4RXO A;  3LJX A;  5TK9 A;  3BG2 A;  2PQ7 A;  4Q7H A;  4Q2C A;  4ZWG A;  4TO4 A;  4QQZ A;  4TO2 A;  2Q14 A;  2PAQ A;  4BZB A;  4MDZ A;  3M1T A;  4MZ7 A;  2CQZ A;  4R8Z A;  3HI0 A;  3TMB A;  2GZ4 A;  4QG1 A;  4TNQ A;  4QG0 A;  5TKA A;  5TK6 A;  4TNR A;  4L1J B;  4RXR A;  4QG2 A; 
#chains in the Genus database with same CATH homology
 2PAU A;  3MZO A;  5AO4 A;  3CCG A;  2HEK A;  4QFX A;  4X9E A;  4TO5 A;  1VQR A;  4TO1 A;  4RXS A;  5AO0 A;  1YNB A;  2O6I A;  4TO3 A;  3KH1 A;  4TNY A;  1YOY A;  4TO0 A;  4TNZ A;  3HC1 A;  4QG4 A;  4XDS A;  3KQ5 A;  5TK7 A;  2O08 A;  4RXQ A;  4MLN A;  2PAR A;  3I7A A;  4ME4 A;  1VJ7 A;  4TNP A;  4QQY A;  3NQW A;  4L7E A;  3MEM A;  4RXP A;  3P3Q A;  3TMD A;  4ZWE A;  3S4L A;  3NR1 A;  2DQB A;  3IRH A;  5AO2 A;  3SK9 A;  2OGI A;  4MCW A;  4MLM A;  4N6W A;  3RF0 A;  4L7W A;  4TO6 A;  2FLO A;  3GW7 A;  4QQX A;  4TNX A;  4L1J A;  3SKD A;  3U1N A;  5TK8 A;  3TM8 A;  4Q2D A;  4QFY A;  5AO3 A;  1XX7 A;  5AO1 A;  4QFZ A;  4QQW A;  4BZC A;  4DMB A;  3TMC A;  4N71 A;  1U6Z A;  2PGS A;  4LRL A;  4RXO A;  3LJX A;  5TK9 A;  3BG2 A;  2PQ7 A;  4Q7H A;  4Q2C A;  4ZWG A;  4TO4 A;  4QQZ A;  4TO2 A;  2Q14 A;  2PAQ A;  4BZB A;  4MDZ A;  3M1T A;  4MZ7 A;  2CQZ A;  4R8Z A;  3HI0 A;  3TMB A;  2GZ4 A;  4QG1 A;  4TNQ A;  4QG0 A;  5TKA A;  5TK6 A;  4TNR A;  4L1J B;  4RXR A;  4QG2 A; 
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