4QQXA

Crystal structure of t. fusca cas3-atp
Total Genus 299
100200300400500600700800900050100150200250300
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
299
sequence length
931
structure length
903
Chain Sequence
PPLDLRFWAKERGLRGKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRSHAAATGKWLPFALPSLGYPNGGLVTGLVAQMLGGHHGTFHPHPSFQSRNPLAEFGFSSPHWEKQRHALLHAVFDATGRPTPPDMLDGPTASVVCGLVILADWLVSQEDFLLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEYARYRVENTDLPRSSTLALLHSMAWLNPDYAPAHRDPFAATDWLMGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTTVAEAQGVYDLLSQWFATLAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPTAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELVVLTPEQNRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDDDSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSFHVLATRFGAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWASQLTEDNHPPEAWRESFYLRDLVLIPQRVTDAVLPTETGGREWLLDPCKGLIF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Thermobifida fusca
publication title Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
pubmed doi rcsb
molecule keywords CRISPR-associated helicase, Cas3 family
total genus 299
structure length 903
sequence length 931
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00271 Helicase_C Helicase conserved C-terminal domain
A PF18019 HD_6 HD domain
A PF18395 Cas3_C Cas3 C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.30 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4qqxA01
4QQZA 3S4LA 4QQXA 3SKDA 4QQWA 4QQYA 4Q2CA 4Q2DA 3SK9A
chains in the Genus database with same CATH superfamily
4TO4A 4TNQA 5AO4A 4QQYA 4TO0A 4RXRA 3IRHA 3HC1A 5TK7A 4L7WA 4RXSA 4X9EA 2PAUA 3P3QA 4TO6A 3BG2A 3NR1A 1VQRA 2PARA 4LRLA 4QG4A 4Q2CA 4MDZA 4QFXA 4QG2A 4L7EA 2FLOA 4N6WA 4ZWEA 3SK9A 5AO0A 4QQZA 4RXOA 5TK9A 4BZBA 3GW7A 5TK6A 3TMBA 4TNRA 4R8ZA 3RF0A 4TNZA 2GZ4A 4ME4A 2CQZA 3TMCA 4L1JB 4RXQA 4TO3A 5AO1A 4MLNA 1YNBA 3TMDA 4TO1A 4QFZA 4Q2DA 4TNYA 4MCWA 4QQXA 4QQWA 2PAQA 1YOYA 4TNXA 3S4LA 1VJ7A 2O08A 3CCGA 3U1NA 2PQ7A 4XDSA 4BZCA 4QG0A 1U6ZA 2PGSA 3I7AA 4N71A 2O6IA 4RXPA 2OGIA 2DQBA 4TO5A 4ZWGA 4L1JA 3KH1A 3TM8A 3NQWA 5TKAA 3SKDA 3HI0A 4MZ7A 3KQ5A 3MZOA 4DMBA 4QG1A 2Q14A 4QFYA 3MEMA 4Q7HA 5AO3A 5AO2A 3LJXA 3M1TA 2HEKA 4TO2A 4TNPA 1XX7A 5TK8A 4MLMA
chains in the Genus database with same CATH topology
4TO4A 4TNQA 5AO4A 4QQYA 4TO0A 4RXRA 3IRHA 3HC1A 5TK7A 4L7WA 4RXSA 4X9EA 2PAUA 3P3QA 4TO6A 3BG2A 3NR1A 1VQRA 2PARA 4LRLA 4QG4A 4Q2CA 4MDZA 4QFXA 4QG2A 4L7EA 2FLOA 4N6WA 4ZWEA 3SK9A 5AO0A 4QQZA 4RXOA 5TK9A 4BZBA 3GW7A 5TK6A 3TMBA 4TNRA 4R8ZA 3RF0A 4TNZA 2GZ4A 4ME4A 2CQZA 3TMCA 4L1JB 4RXQA 4TO3A 5AO1A 4MLNA 1YNBA 3TMDA 4TO1A 4QFZA 4Q2DA 4TNYA 4MCWA 4QQXA 4QQWA 2PAQA 1YOYA 4TNXA 3S4LA 1VJ7A 2O08A 3CCGA 3U1NA 2PQ7A 4XDSA 4BZCA 4QG0A 1U6ZA 2PGSA 3I7AA 4N71A 2O6IA 4RXPA 2OGIA 2DQBA 4TO5A 4ZWGA 4L1JA 3KH1A 3TM8A 3NQWA 5TKAA 3SKDA 3HI0A 4MZ7A 3KQ5A 3MZOA 4DMBA 4QG1A 2Q14A 4QFYA 3MEMA 4Q7HA 5AO3A 5AO2A 3LJXA 3M1TA 2HEKA 4TO2A 4TNPA 1XX7A 5TK8A 4MLMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QQZ A;  3S4L A;  4QQX A;  3SKD A;  4QQW A;  4QQY A;  4Q2C A;  4Q2D A;  3SK9 A; 
#chains in the Genus database with same CATH topology
 4TO4 A;  4TNQ A;  5AO4 A;  4QQY A;  4TO0 A;  4RXR A;  3IRH A;  3HC1 A;  5TK7 A;  4L7W A;  4RXS A;  4X9E A;  2PAU A;  3P3Q A;  4TO6 A;  3BG2 A;  3NR1 A;  1VQR A;  2PAR A;  4LRL A;  4QG4 A;  4Q2C A;  4MDZ A;  4QFX A;  4QG2 A;  4L7E A;  2FLO A;  4N6W A;  4ZWE A;  3SK9 A;  5AO0 A;  4QQZ A;  4RXO A;  5TK9 A;  4BZB A;  3GW7 A;  5TK6 A;  3TMB A;  4TNR A;  4R8Z A;  3RF0 A;  4TNZ A;  2GZ4 A;  4ME4 A;  2CQZ A;  3TMC A;  4L1J B;  4RXQ A;  4TO3 A;  5AO1 A;  4MLN A;  1YNB A;  3TMD A;  4TO1 A;  4QFZ A;  4Q2D A;  4TNY A;  4MCW A;  4QQX A;  4QQW A;  2PAQ A;  1YOY A;  4TNX A;  3S4L A;  1VJ7 A;  2O08 A;  3CCG A;  3U1N A;  2PQ7 A;  4XDS A;  4BZC A;  4QG0 A;  1U6Z A;  2PGS A;  3I7A A;  4N71 A;  2O6I A;  4RXP A;  2OGI A;  2DQB A;  4TO5 A;  4ZWG A;  4L1J A;  3KH1 A;  3TM8 A;  3NQW A;  5TKA A;  3SKD A;  3HI0 A;  4MZ7 A;  3KQ5 A;  3MZO A;  4DMB A;  4QG1 A;  2Q14 A;  4QFY A;  3MEM A;  4Q7H A;  5AO3 A;  5AO2 A;  3LJX A;  3M1T A;  2HEK A;  4TO2 A;  4TNP A;  1XX7 A;  5TK8 A;  4MLM A; 
#chains in the Genus database with same CATH homology
 4TO4 A;  4TNQ A;  5AO4 A;  4QQY A;  4TO0 A;  4RXR A;  3IRH A;  3HC1 A;  5TK7 A;  4L7W A;  4RXS A;  4X9E A;  2PAU A;  3P3Q A;  4TO6 A;  3BG2 A;  3NR1 A;  1VQR A;  2PAR A;  4LRL A;  4QG4 A;  4Q2C A;  4MDZ A;  4QFX A;  4QG2 A;  4L7E A;  2FLO A;  4N6W A;  4ZWE A;  3SK9 A;  5AO0 A;  4QQZ A;  4RXO A;  5TK9 A;  4BZB A;  3GW7 A;  5TK6 A;  3TMB A;  4TNR A;  4R8Z A;  3RF0 A;  4TNZ A;  2GZ4 A;  4ME4 A;  2CQZ A;  3TMC A;  4L1J B;  4RXQ A;  4TO3 A;  5AO1 A;  4MLN A;  1YNB A;  3TMD A;  4TO1 A;  4QFZ A;  4Q2D A;  4TNY A;  4MCW A;  4QQX A;  4QQW A;  2PAQ A;  1YOY A;  4TNX A;  3S4L A;  1VJ7 A;  2O08 A;  3CCG A;  3U1N A;  2PQ7 A;  4XDS A;  4BZC A;  4QG0 A;  1U6Z A;  2PGS A;  3I7A A;  4N71 A;  2O6I A;  4RXP A;  2OGI A;  2DQB A;  4TO5 A;  4ZWG A;  4L1J A;  3KH1 A;  3TM8 A;  3NQW A;  5TKA A;  3SKD A;  3HI0 A;  4MZ7 A;  3KQ5 A;  3MZO A;  4DMB A;  4QG1 A;  2Q14 A;  4QFY A;  3MEM A;  4Q7H A;  5AO3 A;  5AO2 A;  3LJX A;  3M1T A;  2HEK A;  4TO2 A;  4TNP A;  1XX7 A;  5TK8 A;  4MLM A; 
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