4RXQA

The structure of gtp-dutp-bound samhd1
Total Genus 168
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
486
structure length
481
Chain Sequence
TMKVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDIYFIKEQIVGPLESLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWN
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (116-120)S2 (124-128)AH1 (130-137)AH2 (139-142)TI2 (148-151)TII'1 (150-153)AH3 (164-185)TIV2 (155-158)3H2 (153-155)TI3 (157-160)TIV3 (158-161)EMPTY3H3 (187-189)TI6 (226-229)S5 (399-400)AH4 (193-205)AH7 (250-257)TI5 (207-210)TII1 (211-214)AH6 (233-248)AH5 (215-225)TI8 (393-396)AH12 (377-393)AH8 (261-273)TVIII2 (300-303)TIV5 (299-302)TIV6 (303-306)AH9 (310-323)TIV7 (304-307)3H8 (436-438)AH10 (331-337)S3 (338-343)S7 (455-460)TIV8 (342-345)AH14 (424-432)S4 (346-352)3H5 (353-355)AH11 (356-373)AH15 (439-450)TI7 (373-376)TI9 (394-397)3H7 (412-414)3H6 (402-404)S6 (406-407)TI10 (408-411)AH13 (416-420)AH16 (476-482)TIV9 (463-466)3H9 (470-475)TI4 (205-208)3H4 (292-298)TIV4 (287-290)TIV1 (120-123)3H1 (143-145)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title The mechanism of substrate-controlled allosteric regulation of SAMHD1 activated by GTP.
pubmed doi rcsb
molecule keywords Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
total genus 168
structure length 481
sequence length 486
chains with identical sequence B
ec nomenclature ec 3.1.5.-:
pdb deposition date 2014-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4rxqA01
4QG1A 4N6WA 3IRHA 5TK9A 4TNZA 3RF0A 3CCGA 2CQZA 4TO6A 4TO4A 4RXSA 3P3QA 5AO2A 5TK8A 5AO0A 3HI0A 2O08A 2PGSA 2DQBA 4ME4A 4XDSA 2GZ4A 3U1NA 2O6IA 4QG4A 4Q7HA 4TO3A 3NR1A 4ZWEA 4TNPA 4MLMA 2PAUA 4LRLA 2OGIA 4L1JB 3KH1A 4MLNA 4QG0A 3M1TA 5TK6A 4TO2A 2FLOA 4L1JA 3NQWA 2PQ7A 4TNYA 3TMCA 4RXOA 4RXRA 5TKAA 4QFXA 1YOYA 4BZCA 2Q14A 3TM8A 5TK7A 3HC1A 4QG2A 4R8ZA 5AO3A 3MEMA 3BG2A 3I7AA 4QFYA 4TO0A 4L7EA 1VQRA 4DMBA 4L7WA 4MDZA 5AO1A 3MZOA 4QFZA 4TNRA 4MCWA 3TMDA 4X9EA 1XX7A 1YNBA 4TNXA 5AO4A 4N71A 4ZWGA 3LJXA 1U6ZA 2PAQA 2PARA 2HEKA 4RXQA 4RXPA 3TMBA 1VJ7A 4TNQA 4TO5A 4BZBA 4MZ7A 4TO1A
chains in the Genus database with same CATH superfamily
4QG1A 4N6WA 3IRHA 5TK9A 4TNZA 3RF0A 3CCGA 2CQZA 4TO6A 4TO4A 4RXSA 3P3QA 5AO2A 3KQ5A 5AO0A 5TK8A 3HI0A 2O08A 2PGSA 2DQBA 4ME4A 4XDSA 2GZ4A 3U1NA 2O6IA 4QG4A 4Q7HA 4TO3A 3NR1A 4ZWEA 4TNPA 4MLMA 4QQWA 2PAUA 4LRLA 2OGIA 4L1JB 3KH1A 4Q2DA 4QQXA 4MLNA 4QG0A 3M1TA 5TK6A 4TO2A 2FLOA 4L1JA 3NQWA 2PQ7A 4TNYA 3TMCA 4RXOA 4Q2CA 4RXRA 5TKAA 4QFXA 1YOYA 4BZCA 2Q14A 3GW7A 3TM8A 5TK7A 3HC1A 4QG2A 4R8ZA 5AO3A 3MEMA 3BG2A 3I7AA 4QFYA 4TO0A 4L7EA 1VQRA 3SKDA 4DMBA 4L7WA 4MDZA 3S4LA 5AO1A 3MZOA 4QFZA 3SK9A 4TNRA 4QQZA 4QQYA 4MCWA 3TMDA 4X9EA 1XX7A 1YNBA 4TNXA 5AO4A 4N71A 4ZWGA 3LJXA 1U6ZA 2PAQA 2PARA 2HEKA 4RXQA 4RXPA 3TMBA 1VJ7A 4TNQA 4TO5A 4BZBA 4MZ7A 4TO1A
chains in the Genus database with same CATH topology
4QG1A 4N6WA 3IRHA 5TK9A 4TNZA 3RF0A 3CCGA 2CQZA 4TO6A 4TO4A 4RXSA 3P3QA 5AO2A 3KQ5A 5AO0A 5TK8A 3HI0A 2O08A 2PGSA 2DQBA 4ME4A 4XDSA 2GZ4A 3U1NA 2O6IA 4QG4A 4Q7HA 4TO3A 3NR1A 4ZWEA 4TNPA 4MLMA 4QQWA 2PAUA 4LRLA 2OGIA 4L1JB 3KH1A 4Q2DA 4QQXA 4MLNA 4QG0A 3M1TA 5TK6A 4TO2A 2FLOA 4L1JA 3NQWA 2PQ7A 4TNYA 3TMCA 4RXOA 4Q2CA 4RXRA 5TKAA 4QFXA 1YOYA 4BZCA 2Q14A 3GW7A 3TM8A 5TK7A 3HC1A 4QG2A 4R8ZA 5AO3A 3MEMA 3BG2A 3I7AA 4QFYA 4TO0A 4L7EA 1VQRA 3SKDA 4DMBA 4L7WA 4MDZA 3S4LA 5AO1A 3MZOA 4QFZA 3SK9A 4TNRA 4QQZA 4QQYA 4MCWA 3TMDA 4X9EA 1XX7A 1YNBA 4TNXA 5AO4A 4N71A 4ZWGA 3LJXA 1U6ZA 2PAQA 2PARA 2HEKA 4RXQA 4RXPA 3TMBA 1VJ7A 4TNQA 4TO5A 4BZBA 4MZ7A 4TO1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QG1 A;  4N6W A;  3IRH A;  5TK9 A;  4TNZ A;  3RF0 A;  3CCG A;  2CQZ A;  4TO6 A;  4TO4 A;  4RXS A;  3P3Q A;  5AO2 A;  5TK8 A;  5AO0 A;  3HI0 A;  2O08 A;  2PGS A;  2DQB A;  4ME4 A;  4XDS A;  2GZ4 A;  3U1N A;  2O6I A;  4QG4 A;  4Q7H A;  4TO3 A;  3NR1 A;  4ZWE A;  4TNP A;  4MLM A;  2PAU A;  4LRL A;  2OGI A;  4L1J B;  3KH1 A;  4MLN A;  4QG0 A;  3M1T A;  5TK6 A;  4TO2 A;  2FLO A;  4L1J A;  3NQW A;  2PQ7 A;  4TNY A;  3TMC A;  4RXO A;  4RXR A;  5TKA A;  4QFX A;  1YOY A;  4BZC A;  2Q14 A;  3TM8 A;  5TK7 A;  3HC1 A;  4QG2 A;  4R8Z A;  5AO3 A;  3MEM A;  3BG2 A;  3I7A A;  4QFY A;  4TO0 A;  4L7E A;  1VQR A;  4DMB A;  4L7W A;  4MDZ A;  5AO1 A;  3MZO A;  4QFZ A;  4TNR A;  4MCW A;  3TMD A;  4X9E A;  1XX7 A;  1YNB A;  4TNX A;  5AO4 A;  4N71 A;  4ZWG A;  3LJX A;  1U6Z A;  2PAQ A;  2PAR A;  2HEK A;  4RXQ A;  4RXP A;  3TMB A;  1VJ7 A;  4TNQ A;  4TO5 A;  4BZB A;  4MZ7 A;  4TO1 A; 
#chains in the Genus database with same CATH topology
 4QG1 A;  4N6W A;  3IRH A;  5TK9 A;  4TNZ A;  3RF0 A;  3CCG A;  2CQZ A;  4TO6 A;  4TO4 A;  4RXS A;  3P3Q A;  5AO2 A;  3KQ5 A;  5AO0 A;  5TK8 A;  3HI0 A;  2O08 A;  2PGS A;  2DQB A;  4ME4 A;  4XDS A;  2GZ4 A;  3U1N A;  2O6I A;  4QG4 A;  4Q7H A;  4TO3 A;  3NR1 A;  4ZWE A;  4TNP A;  4MLM A;  4QQW A;  2PAU A;  4LRL A;  2OGI A;  4L1J B;  3KH1 A;  4Q2D A;  4QQX A;  4MLN A;  4QG0 A;  3M1T A;  5TK6 A;  4TO2 A;  2FLO A;  4L1J A;  3NQW A;  2PQ7 A;  4TNY A;  3TMC A;  4RXO A;  4Q2C A;  4RXR A;  5TKA A;  4QFX A;  1YOY A;  4BZC A;  2Q14 A;  3GW7 A;  3TM8 A;  5TK7 A;  3HC1 A;  4QG2 A;  4R8Z A;  5AO3 A;  3MEM A;  3BG2 A;  3I7A A;  4QFY A;  4TO0 A;  4L7E A;  1VQR A;  3SKD A;  4DMB A;  4L7W A;  4MDZ A;  3S4L A;  5AO1 A;  3MZO A;  4QFZ A;  3SK9 A;  4TNR A;  4QQZ A;  4QQY A;  4MCW A;  3TMD A;  4X9E A;  1XX7 A;  1YNB A;  4TNX A;  5AO4 A;  4N71 A;  4ZWG A;  3LJX A;  1U6Z A;  2PAQ A;  2PAR A;  2HEK A;  4RXQ A;  4RXP A;  3TMB A;  1VJ7 A;  4TNQ A;  4TO5 A;  4BZB A;  4MZ7 A;  4TO1 A; 
#chains in the Genus database with same CATH homology
 4QG1 A;  4N6W A;  3IRH A;  5TK9 A;  4TNZ A;  3RF0 A;  3CCG A;  2CQZ A;  4TO6 A;  4TO4 A;  4RXS A;  3P3Q A;  5AO2 A;  3KQ5 A;  5AO0 A;  5TK8 A;  3HI0 A;  2O08 A;  2PGS A;  2DQB A;  4ME4 A;  4XDS A;  2GZ4 A;  3U1N A;  2O6I A;  4QG4 A;  4Q7H A;  4TO3 A;  3NR1 A;  4ZWE A;  4TNP A;  4MLM A;  4QQW A;  2PAU A;  4LRL A;  2OGI A;  4L1J B;  3KH1 A;  4Q2D A;  4QQX A;  4MLN A;  4QG0 A;  3M1T A;  5TK6 A;  4TO2 A;  2FLO A;  4L1J A;  3NQW A;  2PQ7 A;  4TNY A;  3TMC A;  4RXO A;  4Q2C A;  4RXR A;  5TKA A;  4QFX A;  1YOY A;  4BZC A;  2Q14 A;  3GW7 A;  3TM8 A;  5TK7 A;  3HC1 A;  4QG2 A;  4R8Z A;  5AO3 A;  3MEM A;  3BG2 A;  3I7A A;  4QFY A;  4TO0 A;  4L7E A;  1VQR A;  3SKD A;  4DMB A;  4L7W A;  4MDZ A;  3S4L A;  5AO1 A;  3MZO A;  4QFZ A;  3SK9 A;  4TNR A;  4QQZ A;  4QQY A;  4MCW A;  3TMD A;  4X9E A;  1XX7 A;  1YNB A;  4TNX A;  5AO4 A;  4N71 A;  4ZWG A;  3LJX A;  1U6Z A;  2PAQ A;  2PAR A;  2HEK A;  4RXQ A;  4RXP A;  3TMB A;  1VJ7 A;  4TNQ A;  4TO5 A;  4BZB A;  4MZ7 A;  4TO1 A; 
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similar chains in the Genus database (?% sequence similarity)
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