4TNXA

Structure basis of cellular dntp regulation, samhd1-gtp-dgtp complex
Total Genus 166
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
487
structure length
481
Chain Sequence
DTMKVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCRNLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLELWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWN
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (211-214)TIV1 (120-123)S1 (116-120)S2 (124-128)AH1 (130-136)TIV3 (155-158)3H1 (143-146)3H2 (151-155)AH3 (164-185)TI3 (157-160)TIV4 (158-161)3H3 (187-189)S5 (399-400)AH4 (193-205)AH7 (250-257)TI5 (207-210)AH5 (215-225)AH6 (233-248)3H6 (402-404)TI6 (226-229)TI9 (393-396)AH12 (377-393)AH14 (424-432)AH8 (261-273)3H4 (292-298)TIV7 (299-302)TIV6 (298-301)TVIII1 (300-303)TI7 (303-306)TIV8 (304-307)AH9 (310-323)3H8 (436-438)AH10 (331-337)S7 (455-462)TIV9 (342-345)S4 (346-352)3H5 (353-355)AH11 (356-373)AH15 (439-450)TI8 (373-376)TI10 (394-397)3H7 (412-414)S6 (406-407)TI11 (408-411)AH13 (416-420)AH16 (474-482)TII2 (464-467)3H9 (470-472)AH2 (139-142)TI4 (205-208)TIV5 (287-290)S3 (338-343)TI2 (148-151)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Structural basis of cellular dNTP regulation by SAMHD1.
pubmed doi rcsb
molecule keywords Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
total genus 166
structure length 481
sequence length 487
chains with identical sequence B, C, D
ec nomenclature ec 3.1.5.-:
pdb deposition date 2014-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4tnxA01
4QFZA 5TK9A 4Q7HA 4QG4A 4TO0A 4QFYA 4N71A 2GZ4A 4QG1A 2DQBA 4X9EA 4RXSA 2PQ7A 2PGSA 2O08A 4RXQA 4L7WA 4QG2A 2PAUA 4TO3A 2HEKA 4MLMA 4L1JB 1XX7A 4ZWEA 4L1JA 1YOYA 4TNRA 3TMBA 3HI0A 5TK7A 3BG2A 4RXPA 3TMCA 2PARA 4RXOA 1VQRA 2OGIA 4MCWA 4RXRA 5AO0A 3TMDA 4LRLA 3TM8A 4TO1A 5TK8A 4TNXA 2O6IA 3CCGA 2Q14A 4TO6A 5AO4A 3KH1A 4TO5A 3NQWA 4R8ZA 2FLOA 5TK6A 5TKAA 3MZOA 3RF0A 3M1TA 4MLNA 5AO1A 4TNYA 4DMBA 4ZWGA 4BZCA 3HC1A 1VJ7A 4XDSA 4MDZA 3LJXA 4N6WA 4TO2A 5AO3A 5AO2A 2PAQA 4TO4A 4QFXA 4ME4A 4MZ7A 3MEMA 2CQZA 3I7AA 4QG0A 4L7EA 3IRHA 4TNZA 3P3QA 4BZBA 4TNQA 3NR1A 1U6ZA 1YNBA 4TNPA 3U1NA
chains in the Genus database with same CATH superfamily
4QFZA 5TK9A 4Q7HA 4QG4A 3SK9A 4TO0A 4QFYA 4N71A 2GZ4A 4QG1A 2DQBA 4X9EA 4RXSA 2PQ7A 2PGSA 2O08A 3GW7A 4RXQA 4L7WA 4QG2A 2PAUA 4TO3A 2HEKA 4MLMA 4L1JB 1XX7A 4ZWEA 4L1JA 1YOYA 4TNRA 3TMBA 3HI0A 5TK7A 3BG2A 4RXPA 3KQ5A 3TMCA 3S4LA 2PARA 4RXOA 1VQRA 2OGIA 4MCWA 4RXRA 5AO0A 3TMDA 4LRLA 3TM8A 4QQWA 4TO1A 5TK8A 4TNXA 2O6IA 3CCGA 2Q14A 4TO6A 5AO4A 3KH1A 4TO5A 3NQWA 4R8ZA 2FLOA 5TK6A 5TKAA 3MZOA 3RF0A 3M1TA 4MLNA 5AO1A 4TNYA 4DMBA 4ZWGA 4BZCA 3HC1A 4QQZA 1VJ7A 4XDSA 4MDZA 3LJXA 4N6WA 4TO2A 5AO3A 5AO2A 2PAQA 4TO4A 4QFXA 4ME4A 4MZ7A 4Q2CA 3MEMA 2CQZA 4QQYA 3I7AA 4QG0A 4QQXA 4Q2DA 4L7EA 3IRHA 4TNZA 3P3QA 4BZBA 3SKDA 4TNQA 3NR1A 1U6ZA 1YNBA 4TNPA 3U1NA
chains in the Genus database with same CATH topology
4QFZA 5TK9A 4Q7HA 4QG4A 3SK9A 4TO0A 4QFYA 4N71A 2GZ4A 4QG1A 2DQBA 4X9EA 4RXSA 2PQ7A 2PGSA 2O08A 3GW7A 4RXQA 4L7WA 4QG2A 2PAUA 4TO3A 2HEKA 4MLMA 4L1JB 1XX7A 4ZWEA 4L1JA 1YOYA 4TNRA 3TMBA 3HI0A 5TK7A 3BG2A 4RXPA 3KQ5A 3TMCA 3S4LA 2PARA 4RXOA 1VQRA 2OGIA 4MCWA 4RXRA 5AO0A 3TMDA 4LRLA 3TM8A 4QQWA 4TO1A 5TK8A 4TNXA 2O6IA 3CCGA 2Q14A 4TO6A 5AO4A 3KH1A 4TO5A 3NQWA 4R8ZA 2FLOA 5TK6A 5TKAA 3MZOA 3RF0A 3M1TA 4MLNA 5AO1A 4TNYA 4DMBA 4ZWGA 4BZCA 3HC1A 4QQZA 1VJ7A 4XDSA 4MDZA 3LJXA 4N6WA 4TO2A 5AO3A 5AO2A 2PAQA 4TO4A 4QFXA 4ME4A 4MZ7A 4Q2CA 3MEMA 2CQZA 4QQYA 3I7AA 4QG0A 4QQXA 4Q2DA 4L7EA 3IRHA 4TNZA 3P3QA 4BZBA 3SKDA 4TNQA 3NR1A 1U6ZA 1YNBA 4TNPA 3U1NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QFZ A;  5TK9 A;  4Q7H A;  4QG4 A;  4TO0 A;  4QFY A;  4N71 A;  2GZ4 A;  4QG1 A;  2DQB A;  4X9E A;  4RXS A;  2PQ7 A;  2PGS A;  2O08 A;  4RXQ A;  4L7W A;  4QG2 A;  2PAU A;  4TO3 A;  2HEK A;  4MLM A;  4L1J B;  1XX7 A;  4ZWE A;  4L1J A;  1YOY A;  4TNR A;  3TMB A;  3HI0 A;  5TK7 A;  3BG2 A;  4RXP A;  3TMC A;  2PAR A;  4RXO A;  1VQR A;  2OGI A;  4MCW A;  4RXR A;  5AO0 A;  3TMD A;  4LRL A;  3TM8 A;  4TO1 A;  5TK8 A;  4TNX A;  2O6I A;  3CCG A;  2Q14 A;  4TO6 A;  5AO4 A;  3KH1 A;  4TO5 A;  3NQW A;  4R8Z A;  2FLO A;  5TK6 A;  5TKA A;  3MZO A;  3RF0 A;  3M1T A;  4MLN A;  5AO1 A;  4TNY A;  4DMB A;  4ZWG A;  4BZC A;  3HC1 A;  1VJ7 A;  4XDS A;  4MDZ A;  3LJX A;  4N6W A;  4TO2 A;  5AO3 A;  5AO2 A;  2PAQ A;  4TO4 A;  4QFX A;  4ME4 A;  4MZ7 A;  3MEM A;  2CQZ A;  3I7A A;  4QG0 A;  4L7E A;  3IRH A;  4TNZ A;  3P3Q A;  4BZB A;  4TNQ A;  3NR1 A;  1U6Z A;  1YNB A;  4TNP A;  3U1N A; 
#chains in the Genus database with same CATH topology
 4QFZ A;  5TK9 A;  4Q7H A;  4QG4 A;  3SK9 A;  4TO0 A;  4QFY A;  4N71 A;  2GZ4 A;  4QG1 A;  2DQB A;  4X9E A;  4RXS A;  2PQ7 A;  2PGS A;  2O08 A;  3GW7 A;  4RXQ A;  4L7W A;  4QG2 A;  2PAU A;  4TO3 A;  2HEK A;  4MLM A;  4L1J B;  1XX7 A;  4ZWE A;  4L1J A;  1YOY A;  4TNR A;  3TMB A;  3HI0 A;  5TK7 A;  3BG2 A;  4RXP A;  3KQ5 A;  3TMC A;  3S4L A;  2PAR A;  4RXO A;  1VQR A;  2OGI A;  4MCW A;  4RXR A;  5AO0 A;  3TMD A;  4LRL A;  3TM8 A;  4QQW A;  4TO1 A;  5TK8 A;  4TNX A;  2O6I A;  3CCG A;  2Q14 A;  4TO6 A;  5AO4 A;  3KH1 A;  4TO5 A;  3NQW A;  4R8Z A;  2FLO A;  5TK6 A;  5TKA A;  3MZO A;  3RF0 A;  3M1T A;  4MLN A;  5AO1 A;  4TNY A;  4DMB A;  4ZWG A;  4BZC A;  3HC1 A;  4QQZ A;  1VJ7 A;  4XDS A;  4MDZ A;  3LJX A;  4N6W A;  4TO2 A;  5AO3 A;  5AO2 A;  2PAQ A;  4TO4 A;  4QFX A;  4ME4 A;  4MZ7 A;  4Q2C A;  3MEM A;  2CQZ A;  4QQY A;  3I7A A;  4QG0 A;  4QQX A;  4Q2D A;  4L7E A;  3IRH A;  4TNZ A;  3P3Q A;  4BZB A;  3SKD A;  4TNQ A;  3NR1 A;  1U6Z A;  1YNB A;  4TNP A;  3U1N A; 
#chains in the Genus database with same CATH homology
 4QFZ A;  5TK9 A;  4Q7H A;  4QG4 A;  3SK9 A;  4TO0 A;  4QFY A;  4N71 A;  2GZ4 A;  4QG1 A;  2DQB A;  4X9E A;  4RXS A;  2PQ7 A;  2PGS A;  2O08 A;  3GW7 A;  4RXQ A;  4L7W A;  4QG2 A;  2PAU A;  4TO3 A;  2HEK A;  4MLM A;  4L1J B;  1XX7 A;  4ZWE A;  4L1J A;  1YOY A;  4TNR A;  3TMB A;  3HI0 A;  5TK7 A;  3BG2 A;  4RXP A;  3KQ5 A;  3TMC A;  3S4L A;  2PAR A;  4RXO A;  1VQR A;  2OGI A;  4MCW A;  4RXR A;  5AO0 A;  3TMD A;  4LRL A;  3TM8 A;  4QQW A;  4TO1 A;  5TK8 A;  4TNX A;  2O6I A;  3CCG A;  2Q14 A;  4TO6 A;  5AO4 A;  3KH1 A;  4TO5 A;  3NQW A;  4R8Z A;  2FLO A;  5TK6 A;  5TKA A;  3MZO A;  3RF0 A;  3M1T A;  4MLN A;  5AO1 A;  4TNY A;  4DMB A;  4ZWG A;  4BZC A;  3HC1 A;  4QQZ A;  1VJ7 A;  4XDS A;  4MDZ A;  3LJX A;  4N6W A;  4TO2 A;  5AO3 A;  5AO2 A;  2PAQ A;  4TO4 A;  4QFX A;  4ME4 A;  4MZ7 A;  4Q2C A;  3MEM A;  2CQZ A;  4QQY A;  3I7A A;  4QG0 A;  4QQX A;  4Q2D A;  4L7E A;  3IRH A;  4TNZ A;  3P3Q A;  4BZB A;  3SKD A;  4TNQ A;  3NR1 A;  1U6Z A;  1YNB A;  4TNP A;  3U1N A; 
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