5AO2A

Crystal structure of human samhd1 (amino acid residues 115-583) r164a variant bound to dgtp
Total Genus 143
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
468
structure length
436
Chain Sequence
MKVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNAFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMIDHVSFYCKTAPNRAIEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQ
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH5 (215-225)EMPTYTIV3 (155-158)TIV6 (287-290)S1 (116-120)S2 (124-128)3H2 (151-155)AH2 (139-142)AH3 (164-185)TI2 (148-151)TI3 (157-160)AH12 (377-392)3H3 (187-189)AH4 (193-205)AH7 (250-257)TI4 (205-208)AH6 (233-248)TI5 (207-210)TII1 (211-214)TI10 (394-397)TIV5 (226-229)AH8 (261-273)TI11 (408-411)3H4 (292-299)TIV7 (299-302)TIV8 (303-306)TVIII1 (300-303)AH9 (310-323)TI6 (304-307)AH10 (331-337)AH13 (416-420)S3 (338-343)3H5 (402-404)TIV9 (342-345)S4 (346-352)TI7 (352-355)AH11 (355-373)AH14 (424-432)TI8 (373-376)S5 (399-400)3H7 (436-438)TIV1 (120-123)AH1 (130-137)S6 (406-407)TI9 (393-396)3H6 (412-414)3H1 (143-145)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Phospho-Dependent Regulation of Samhd1 Oligomerisation Couples Catalysis and Restriction.
pubmed doi rcsb
molecule keywords DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1
total genus 143
structure length 436
sequence length 468
chains with identical sequence B, C, D
ec nomenclature ec 3.1.5.-:
pdb deposition date 2015-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 5ao2A01
4L1JA 4QG4A 4ZWEA 4MZ7A 4RXRA 4RXPA 3KH1A 2PGSA 2PQ7A 3TMBA 4MCWA 4TO1A 5AO2A 4QFZA 3LJXA 4DMBA 4QG1A 2FLOA 1YOYA 2O6IA 1YNBA 5TK9A 4R8ZA 2HEKA 3TMDA 4RXOA 4TO5A 4L1JB 3IRHA 4TNXA 1U6ZA 4QG2A 4QFXA 1VQRA 3TM8A 3M1TA 3NR1A 3CCGA 2PARA 4TO3A 2PAUA 4L7WA 3I7AA 4ME4A 4BZBA 4TNRA 4ZWGA 4RXSA 4Q7HA 5TK6A 4TNZA 5TKAA 4TO6A 4TNPA 4QG0A 5AO1A 2PAQA 2O08A 4TNQA 4N71A 5TK7A 4X9EA 5AO4A 4LRLA 1XX7A 3NQWA 4RXQA 2DQBA 3MZOA 4MLMA 5AO0A 4L7EA 4BZCA 3BG2A 5AO3A 3MEMA 2CQZA 3TMCA 3HC1A 4QFYA 4N6WA 4TNYA 3U1NA 1VJ7A 4MLNA 4TO2A 2OGIA 3HI0A 4TO4A 3P3QA 5TK8A 4MDZA 2GZ4A 3RF0A 2Q14A 4TO0A 4XDSA
chains in the Genus database with same CATH superfamily
4L1JA 4QG4A 3GW7A 4ZWEA 4MZ7A 4RXRA 4RXPA 3KH1A 2PGSA 2PQ7A 3TMBA 4MCWA 4TO1A 5AO2A 4QFZA 3LJXA 4DMBA 4QG1A 4QQZA 2FLOA 1YOYA 3S4LA 2O6IA 1YNBA 5TK9A 4R8ZA 2HEKA 3TMDA 4RXOA 4TO5A 4L1JB 3IRHA 4TNXA 1U6ZA 4QG2A 4QFXA 1VQRA 3TM8A 3M1TA 3NR1A 3CCGA 4QQWA 2PARA 4TO3A 2PAUA 4Q2CA 4L7WA 3I7AA 4ME4A 4BZBA 4TNRA 4ZWGA 4RXSA 4Q7HA 4Q2DA 5TK6A 4TNZA 5TKAA 4TO6A 4TNPA 4QG0A 3KQ5A 5AO1A 2PAQA 2O08A 3SKDA 4TNQA 4N71A 5TK7A 4X9EA 5AO4A 4LRLA 1XX7A 3NQWA 4RXQA 2DQBA 3MZOA 4MLMA 5AO0A 4QQYA 4L7EA 4BZCA 3BG2A 5AO3A 3MEMA 2CQZA 3TMCA 3HC1A 4QFYA 4N6WA 3SK9A 4TNYA 3U1NA 1VJ7A 4MLNA 4TO2A 2OGIA 3HI0A 4TO4A 4QQXA 3P3QA 5TK8A 4MDZA 2GZ4A 3RF0A 2Q14A 4TO0A 4XDSA
chains in the Genus database with same CATH topology
4L1JA 4QG4A 3GW7A 4ZWEA 4MZ7A 4RXRA 4RXPA 3KH1A 2PGSA 2PQ7A 3TMBA 4MCWA 4TO1A 5AO2A 4QFZA 3LJXA 4DMBA 4QG1A 4QQZA 2FLOA 1YOYA 3S4LA 2O6IA 1YNBA 5TK9A 4R8ZA 2HEKA 3TMDA 4RXOA 4TO5A 4L1JB 3IRHA 4TNXA 1U6ZA 4QG2A 4QFXA 1VQRA 3TM8A 3M1TA 3NR1A 3CCGA 4QQWA 2PARA 4TO3A 2PAUA 4Q2CA 4L7WA 3I7AA 4ME4A 4BZBA 4TNRA 4ZWGA 4RXSA 4Q7HA 4Q2DA 5TK6A 4TNZA 5TKAA 4TO6A 4TNPA 4QG0A 3KQ5A 5AO1A 2PAQA 2O08A 3SKDA 4TNQA 4N71A 5TK7A 4X9EA 5AO4A 4LRLA 1XX7A 3NQWA 4RXQA 2DQBA 3MZOA 4MLMA 5AO0A 4QQYA 4L7EA 4BZCA 3BG2A 5AO3A 3MEMA 2CQZA 3TMCA 3HC1A 4QFYA 4N6WA 3SK9A 4TNYA 3U1NA 1VJ7A 4MLNA 4TO2A 2OGIA 3HI0A 4TO4A 4QQXA 3P3QA 5TK8A 4MDZA 2GZ4A 3RF0A 2Q14A 4TO0A 4XDSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L1J A;  4QG4 A;  4ZWE A;  4MZ7 A;  4RXR A;  4RXP A;  3KH1 A;  2PGS A;  2PQ7 A;  3TMB A;  4MCW A;  4TO1 A;  5AO2 A;  4QFZ A;  3LJX A;  4DMB A;  4QG1 A;  2FLO A;  1YOY A;  2O6I A;  1YNB A;  5TK9 A;  4R8Z A;  2HEK A;  3TMD A;  4RXO A;  4TO5 A;  4L1J B;  3IRH A;  4TNX A;  1U6Z A;  4QG2 A;  4QFX A;  1VQR A;  3TM8 A;  3M1T A;  3NR1 A;  3CCG A;  2PAR A;  4TO3 A;  2PAU A;  4L7W A;  3I7A A;  4ME4 A;  4BZB A;  4TNR A;  4ZWG A;  4RXS A;  4Q7H A;  5TK6 A;  4TNZ A;  5TKA A;  4TO6 A;  4TNP A;  4QG0 A;  5AO1 A;  2PAQ A;  2O08 A;  4TNQ A;  4N71 A;  5TK7 A;  4X9E A;  5AO4 A;  4LRL A;  1XX7 A;  3NQW A;  4RXQ A;  2DQB A;  3MZO A;  4MLM A;  5AO0 A;  4L7E A;  4BZC A;  3BG2 A;  5AO3 A;  3MEM A;  2CQZ A;  3TMC A;  3HC1 A;  4QFY A;  4N6W A;  4TNY A;  3U1N A;  1VJ7 A;  4MLN A;  4TO2 A;  2OGI A;  3HI0 A;  4TO4 A;  3P3Q A;  5TK8 A;  4MDZ A;  2GZ4 A;  3RF0 A;  2Q14 A;  4TO0 A;  4XDS A; 
#chains in the Genus database with same CATH topology
 4L1J A;  4QG4 A;  3GW7 A;  4ZWE A;  4MZ7 A;  4RXR A;  4RXP A;  3KH1 A;  2PGS A;  2PQ7 A;  3TMB A;  4MCW A;  4TO1 A;  5AO2 A;  4QFZ A;  3LJX A;  4DMB A;  4QG1 A;  4QQZ A;  2FLO A;  1YOY A;  3S4L A;  2O6I A;  1YNB A;  5TK9 A;  4R8Z A;  2HEK A;  3TMD A;  4RXO A;  4TO5 A;  4L1J B;  3IRH A;  4TNX A;  1U6Z A;  4QG2 A;  4QFX A;  1VQR A;  3TM8 A;  3M1T A;  3NR1 A;  3CCG A;  4QQW A;  2PAR A;  4TO3 A;  2PAU A;  4Q2C A;  4L7W A;  3I7A A;  4ME4 A;  4BZB A;  4TNR A;  4ZWG A;  4RXS A;  4Q7H A;  4Q2D A;  5TK6 A;  4TNZ A;  5TKA A;  4TO6 A;  4TNP A;  4QG0 A;  3KQ5 A;  5AO1 A;  2PAQ A;  2O08 A;  3SKD A;  4TNQ A;  4N71 A;  5TK7 A;  4X9E A;  5AO4 A;  4LRL A;  1XX7 A;  3NQW A;  4RXQ A;  2DQB A;  3MZO A;  4MLM A;  5AO0 A;  4QQY A;  4L7E A;  4BZC A;  3BG2 A;  5AO3 A;  3MEM A;  2CQZ A;  3TMC A;  3HC1 A;  4QFY A;  4N6W A;  3SK9 A;  4TNY A;  3U1N A;  1VJ7 A;  4MLN A;  4TO2 A;  2OGI A;  3HI0 A;  4TO4 A;  4QQX A;  3P3Q A;  5TK8 A;  4MDZ A;  2GZ4 A;  3RF0 A;  2Q14 A;  4TO0 A;  4XDS A; 
#chains in the Genus database with same CATH homology
 4L1J A;  4QG4 A;  3GW7 A;  4ZWE A;  4MZ7 A;  4RXR A;  4RXP A;  3KH1 A;  2PGS A;  2PQ7 A;  3TMB A;  4MCW A;  4TO1 A;  5AO2 A;  4QFZ A;  3LJX A;  4DMB A;  4QG1 A;  4QQZ A;  2FLO A;  1YOY A;  3S4L A;  2O6I A;  1YNB A;  5TK9 A;  4R8Z A;  2HEK A;  3TMD A;  4RXO A;  4TO5 A;  4L1J B;  3IRH A;  4TNX A;  1U6Z A;  4QG2 A;  4QFX A;  1VQR A;  3TM8 A;  3M1T A;  3NR1 A;  3CCG A;  4QQW A;  2PAR A;  4TO3 A;  2PAU A;  4Q2C A;  4L7W A;  3I7A A;  4ME4 A;  4BZB A;  4TNR A;  4ZWG A;  4RXS A;  4Q7H A;  4Q2D A;  5TK6 A;  4TNZ A;  5TKA A;  4TO6 A;  4TNP A;  4QG0 A;  3KQ5 A;  5AO1 A;  2PAQ A;  2O08 A;  3SKD A;  4TNQ A;  4N71 A;  5TK7 A;  4X9E A;  5AO4 A;  4LRL A;  1XX7 A;  3NQW A;  4RXQ A;  2DQB A;  3MZO A;  4MLM A;  5AO0 A;  4QQY A;  4L7E A;  4BZC A;  3BG2 A;  5AO3 A;  3MEM A;  2CQZ A;  3TMC A;  3HC1 A;  4QFY A;  4N6W A;  3SK9 A;  4TNY A;  3U1N A;  1VJ7 A;  4MLN A;  4TO2 A;  2OGI A;  3HI0 A;  4TO4 A;  4QQX A;  3P3Q A;  5TK8 A;  4MDZ A;  2GZ4 A;  3RF0 A;  2Q14 A;  4TO0 A;  4XDS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.