1NLTA

The crystal structure of hsp40 ydj1
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
228
structure length
228
Chain Sequence
PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Saccharomyces cerevisiae
publication title The crystal structure of the yeast Hsp40 Ydj1 complexed with its peptide substrate.
pubmed doi rcsb
molecule keywords Mitochondrial protein import protein MAS5
total genus 36
structure length 228
sequence length 228
ec nomenclature
pdb deposition date 2003-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00684 DnaJ_CXXCXGXG DnaJ central domain
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.230.10 Mainly Beta Ribbon Chaperone, DNAj Protein; Chain A Heat shock protein DnaJ, cysteine-rich domain 1nltA02
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 1nltA03
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 1nltA01
1GMWA 3LA0A 1GMUA 1EARA 3TJAA 3AGZA 3L9ZA 3AGXA 4J80A 2Q2GA 1C3GA 1XAOA 1NLTA 3NXZA 3TJ9A 1GMWD 3I38A 2B26A 2CTTA 4L3KA 3NY0A 1GMVA 2QLDA 1EB0A 3AGYA 3TJ8A 1EXKA 3LZ8A
chains in the Genus database with same CATH superfamily
1GMWA 3LA0A 1GMUA 1EARA 2BX9A 3TJAA 2ZP8E 2ODXA 3AGZA 3C6EC 2KO8A 3L9ZA 3AGXA 4J80A 2Q2GA 3LCZA 1C3GA 1XAOA 3AKOB 1NLTA 3C5XC 3NXZA 3TJ9A 3LD01 1GMWD 2JZ8A 2B26A 3I38A 2CTTA 4L3KA 3NY0A 1GMVA 2ZP9C 2QLDA 1EB0A 2JVMA 3AGYA 3TJ8A 2JRRA 1EXKA 3LZ8A
chains in the Genus database with same CATH topology
1GMWA 3LA0A 1GMUA 1EARA 3TJAA 3AGZA 3L9ZA 3AGXA 4J80A 2Q2GA 1C3GA 1XAOA 1NLTA 3NXZA 3TJ9A 1GMWD 3I38A 2B26A 2CTTA 4L3KA 3NY0A 1GMVA 2QLDA 1EB0A 3AGYA 3TJ8A 1EXKA 3LZ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GMW A;  3LA0 A;  1GMU A;  1EAR A;  3TJA A;  3AGZ A;  3L9Z A;  3AGX A;  4J80 A;  2Q2G A;  1C3G A;  1XAO A;  1NLT A;  3NXZ A;  3TJ9 A;  1GMW D;  3I38 A;  2B26 A;  2CTT A;  4L3K A;  3NY0 A;  1GMV A;  2QLD A;  1EB0 A;  3AGY A;  3TJ8 A;  1EXK A;  3LZ8 A; 
#chains in the Genus database with same CATH topology
 1GMW A;  3LA0 A;  1GMU A;  1EAR A;  2BX9 A;  3TJA A;  2ZP8 E;  2ODX A;  3AGZ A;  3C6E C;  2KO8 A;  3L9Z A;  3AGX A;  4J80 A;  2Q2G A;  3LCZ A;  1C3G A;  1XAO A;  3AKO B;  1NLT A;  3C5X C;  3NXZ A;  3TJ9 A;  3LD0 1;  1GMW D;  2JZ8 A;  2B26 A;  3I38 A;  2CTT A;  4L3K A;  3NY0 A;  1GMV A;  2ZP9 C;  2QLD A;  1EB0 A;  2JVM A;  3AGY A;  3TJ8 A;  2JRR A;  1EXK A;  3LZ8 A; 
#chains in the Genus database with same CATH homology
 1GMW A;  3LA0 A;  1GMU A;  1EAR A;  3TJA A;  3AGZ A;  3L9Z A;  3AGX A;  4J80 A;  2Q2G A;  1C3G A;  1XAO A;  1NLT A;  3NXZ A;  3TJ9 A;  1GMW D;  3I38 A;  2B26 A;  2CTT A;  4L3K A;  3NY0 A;  1GMV A;  2QLD A;  1EB0 A;  3AGY A;  3TJ8 A;  1EXK A;  3LZ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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