1NLT | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	228
structure length	228
Chain Sequence	PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 228 atoms

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228 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Saccharomyces cerevisiae
publication title	The crystal structure of the yeast Hsp40 Ydj1 complexed with its peptide substrate. pubmed doi rcsb
molecule keywords	Mitochondrial protein import protein MAS5
total genus	36
structure length	228
sequence length	228
ec nomenclature
pdb deposition date	2003-01-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00684	DnaJ_CXXCXGXG	DnaJ central domain
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.230.10	Mainly Beta	Ribbon	Chaperone, DNAj Protein; Chain A	Heat shock protein DnaJ, cysteine-rich domain	1nltA02
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	1nltA03
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	1nltA01

1NLTA 3AGYA 3L9ZA 3I38A 1EB0A 1GMUA 3AGXA 3TJAA 3LA0A 2B26A 2Q2GA 2CTTA 1GMVA 1GMWD 3TJ8A 1EARA 3TJ9A 3NY0A 3AGZA 1XAOA 3LZ8A 4J80A 4L3KA 1EXKA 2QLDA 1GMWA 1C3GA 3NXZA
chains in the Genus database with same CATH superfamily

1NLTA 3AGYA 3LCZA 3L9ZA 2ZP9C 3I38A 1EB0A 3C5XC 1GMUA 2BX9A 3AGXA 3TJAA 3LA0A 2B26A 2Q2GA 2CTTA 1GMVA 2JZ8A 1GMWD 2ZP8E 3TJ8A 1EARA 3TJ9A 3NY0A 2JRRA 1XAOA 3AGZA 3LZ8A 4J80A 2JVMA 4L3KA 1EXKA 2QLDA 2KO8A 1GMWA 2ODXA 3C6EC 1C3GA 3AKOB 3LD01 3NXZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NLT A;  3AGY A;  3L9Z A;  3I38 A;  1EB0 A;  1GMU A;  3AGX A;  3TJA A;  3LA0 A;  2B26 A;  2Q2G A;  2CTT A;  1GMV A;  1GMW D;  3TJ8 A;  1EAR A;  3TJ9 A;  3NY0 A;  3AGZ A;  1XAO A;  3LZ8 A;  4J80 A;  4L3K A;  1EXK A;  2QLD A;  1GMW A;  1C3G A;  3NXZ A; 
#chains in the Genus database with same CATH topology
 1NLT A;  3AGY A;  3LCZ A;  3L9Z A;  2ZP9 C;  3I38 A;  1EB0 A;  3C5X C;  1GMU A;  2BX9 A;  3AGX A;  3TJA A;  3LA0 A;  2B26 A;  2Q2G A;  2CTT A;  1GMV A;  2JZ8 A;  1GMW D;  2ZP8 E;  3TJ8 A;  1EAR A;  3TJ9 A;  3NY0 A;  2JRR A;  1XAO A;  3AGZ A;  3LZ8 A;  4J80 A;  2JVM A;  4L3K A;  1EXK A;  2QLD A;  2KO8 A;  1GMW A;  2ODX A;  3C6E C;  1C3G A;  3AKO B;  3LD0 1;  3NXZ A; 
#chains in the Genus database with same CATH homology
 1NLT A;  3AGY A;  3L9Z A;  3I38 A;  1EB0 A;  1GMU A;  3AGX A;  3TJA A;  3LA0 A;  2B26 A;  2Q2G A;  2CTT A;  1GMV A;  1GMW D;  3TJ8 A;  1EAR A;  3TJ9 A;  3NY0 A;  3AGZ A;  1XAO A;  3LZ8 A;  4J80 A;  4L3K A;  1EXK A;  2QLD A;  1GMW A;  1C3G A;  3NXZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NLTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations