3C5XC

Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at low ph
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
81
structure length
81
Chain Sequence
FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The flavivirus precursor membrane-envelope protein complex: structure and maturation.
pubmed doi rcsb
molecule tags Viral protein
source organism Dengue virus 2 thailand/16681/84
molecule keywords Envelope protein E
total genus 13
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2008-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01570 Flavi_propep Flavivirus polyprotein propeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.50 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain HSP40/DNAj peptide-binding domain 3c5xC00
3C5XC 3C6EC
chains in the Genus database with same CATH superfamily
2Q2GA 3C5XC 3C6EC 3AKOB 3AGYA 3TJ8A 2ODXA 1EB0A 3LZ8A 3AGZA 1C3GA 1GMWA 1GMUA 3L9ZA 1EARA 3NXZA 3NY0A 3AGXA 2JRRA 3TJ9A 1GMWD 1GMVA 2JZ8A 4J80A 3I38A 1NLTA 2B26A 1XAOA 4L3KA 2QLDA 3LA0A 3TJAA 2JVMA
chains in the Genus database with same CATH topology
3C5XC 3C6EC 3AKOB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C5X C;  3C6E C; 
#chains in the Genus database with same CATH topology
 2Q2G A;  3C5X C;  3C6E C;  3AKO B;  3AGY A;  3TJ8 A;  2ODX A;  1EB0 A;  3LZ8 A;  3AGZ A;  1C3G A;  1GMW A;  1GMU A;  3L9Z A;  1EAR A;  3NXZ A;  3NY0 A;  3AGX A;  2JRR A;  3TJ9 A;  1GMW D;  1GMV A;  2JZ8 A;  4J80 A;  3I38 A;  1NLT A;  2B26 A;  1XAO A;  4L3K A;  2QLD A;  3LA0 A;  3TJA A;  2JVM A; 
#chains in the Genus database with same CATH homology
 3C5X C;  3C6E C;  3AKO B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...