1SMNA

Identification of the serratia endonuclease dimer: structural basis and implications for catalysis
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
241
structure length
241
Chain Sequence
SIDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMGKLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNTPKGADFCQFRVTVDEIEKRTGLIIWAGLPDDVQASLKSKPGVLPELMGCKN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Identification of the Serratia endonuclease dimer: structural basis and implications for catalysis.
pubmed rcsb
molecule tags Endonuclease
source organism Serratia marcescens
molecule keywords EXTRACELLULAR ENDONUCLEASE
total genus 74
structure length 241
sequence length 241
chains with identical sequence B
ec nomenclature ec 3.1.30.2: Serratia marcescens nuclease.
pdb deposition date 1995-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 1smnA00
3NKOA 3NKQA 3NKPA 3NKMA 4E3YA 4ZG6A 4GTXA 2XR9A 5LQQA 4QH0A 5DLVA 2XH3A 4A1NA 5IJSA 3WAVA 5L0KA 5DLWA 2XRGA 3NKRA 5DLTA 5KXAA 5L0EA 4ZG7A 3S5BA 3WAYA 1ZM8A 4QGOA 4ZGAA 5IJQA 4GTWA 1QL0A 3NKNA 4GTYA 4B56A 1G8TA 3OWVA 4QN0A 5LIAA 5GKCA 2O3BA 4ZG9A 5INHA 4GTZA 3ISMA 3WAWA 1QAEA 3WAXA 5GKPA 2XGRA 5HRTA 1SMNA 5L0BA
chains in the Genus database with same CATH superfamily
3NKOA 3NKQA 3NKPA 3NKMA 4E3YA 4ZG6A 4GTXA 2XR9A 5LQQA 4QH0A 5DLVA 2XH3A 4A1NA 5IJSA 3WAVA 5L0KA 5DLWA 2XRGA 3NKRA 5DLTA 5KXAA 5L0EA 4ZG7A 3S5BA 3WAYA 1ZM8A 4QGOA 4ZGAA 5IJQA 4GTWA 1QL0A 3NKNA 4GTYA 4B56A 1G8TA 3OWVA 4QN0A 5LIAA 5GKCA 2O3BA 4ZG9A 5INHA 4GTZA 3ISMA 3WAWA 1QAEA 3WAXA 5GKPA 2XGRA 5HRTA 1SMNA 5L0BA
chains in the Genus database with same CATH topology
3NKOA 3NKQA 3NKPA 3NKMA 4E3YA 4ZG6A 4GTXA 2XR9A 5LQQA 4QH0A 5DLVA 2XH3A 4A1NA 5IJSA 3WAVA 5L0KA 5DLWA 2XRGA 3NKRA 5DLTA 5KXAA 5L0EA 4ZG7A 3S5BA 3WAYA 1ZM8A 4QGOA 4ZGAA 5IJQA 4GTWA 1QL0A 3NKNA 4GTYA 4B56A 1G8TA 3OWVA 4QN0A 5LIAA 5GKCA 2O3BA 4ZG9A 5INHA 4GTZA 3ISMA 3WAWA 1QAEA 3WAXA 5GKPA 2XGRA 5HRTA 1SMNA 5L0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKO A;  3NKQ A;  3NKP A;  3NKM A;  4E3Y A;  4ZG6 A;  4GTX A;  2XR9 A;  5LQQ A;  4QH0 A;  5DLV A;  2XH3 A;  4A1N A;  5IJS A;  3WAV A;  5L0K A;  5DLW A;  2XRG A;  3NKR A;  5DLT A;  5KXA A;  5L0E A;  4ZG7 A;  3S5B A;  3WAY A;  1ZM8 A;  4QGO A;  4ZGA A;  5IJQ A;  4GTW A;  1QL0 A;  3NKN A;  4GTY A;  4B56 A;  1G8T A;  3OWV A;  4QN0 A;  5LIA A;  5GKC A;  2O3B A;  4ZG9 A;  5INH A;  4GTZ A;  3ISM A;  3WAW A;  1QAE A;  3WAX A;  5GKP A;  2XGR A;  5HRT A;  1SMN A;  5L0B A; 
#chains in the Genus database with same CATH topology
 3NKO A;  3NKQ A;  3NKP A;  3NKM A;  4E3Y A;  4ZG6 A;  4GTX A;  2XR9 A;  5LQQ A;  4QH0 A;  5DLV A;  2XH3 A;  4A1N A;  5IJS A;  3WAV A;  5L0K A;  5DLW A;  2XRG A;  3NKR A;  5DLT A;  5KXA A;  5L0E A;  4ZG7 A;  3S5B A;  3WAY A;  1ZM8 A;  4QGO A;  4ZGA A;  5IJQ A;  4GTW A;  1QL0 A;  3NKN A;  4GTY A;  4B56 A;  1G8T A;  3OWV A;  4QN0 A;  5LIA A;  5GKC A;  2O3B A;  4ZG9 A;  5INH A;  4GTZ A;  3ISM A;  3WAW A;  1QAE A;  3WAX A;  5GKP A;  2XGR A;  5HRT A;  1SMN A;  5L0B A; 
#chains in the Genus database with same CATH homology
 3NKO A;  3NKQ A;  3NKP A;  3NKM A;  4E3Y A;  4ZG6 A;  4GTX A;  2XR9 A;  5LQQ A;  4QH0 A;  5DLV A;  2XH3 A;  4A1N A;  5IJS A;  3WAV A;  5L0K A;  5DLW A;  2XRG A;  3NKR A;  5DLT A;  5KXA A;  5L0E A;  4ZG7 A;  3S5B A;  3WAY A;  1ZM8 A;  4QGO A;  4ZGA A;  5IJQ A;  4GTW A;  1QL0 A;  3NKN A;  4GTY A;  4B56 A;  1G8T A;  3OWV A;  4QN0 A;  5LIA A;  5GKC A;  2O3B A;  4ZG9 A;  5INH A;  4GTZ A;  3ISM A;  3WAW A;  1QAE A;  3WAX A;  5GKP A;  2XGR A;  5HRT A;  1SMN A;  5L0B A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...