3S5BA

Crystal structure of ced-3 protease suppressor-6 (cps-6) from caenorhabditis elegans
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
241
structure length
236
Chain Sequence
PSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Caenorhabditis elegans
publication title Structural insights into apoptotic DNA degradation by CED-3 protease suppressor-6 (CPS-6) from Caenorhabditis elegans
pubmed doi rcsb
molecule keywords Endonuclease G
total genus 69
structure length 236
sequence length 241
chains with identical sequence B
ec nomenclature ec 3.1.30.-:
pdb deposition date 2011-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 3s5bA00
3NKOA 2O3BA 5L0BA 5L0EA 3WAYA 1QL0A 3ISMA 5DLTA 4ZGAA 4A1NA 4ZG6A 4GTWA 3WAVA 5IJSA 2XGRA 5LQQA 4QGOA 3NKPA 5GKCA 5KXAA 1SMNA 4E3YA 5LIAA 1QAEA 1ZM8A 3OWVA 5L0KA 3WAXA 3NKRA 4GTZA 2XRGA 3NKMA 5DLWA 5IJQA 3WAWA 3S5BA 4GTXA 5DLVA 5GKPA 5INHA 3NKQA 4B56A 5HRTA 4ZG7A 3NKNA 4QH0A 2XR9A 4ZG9A 2XH3A 4QN0A 1G8TA 4GTYA
chains in the Genus database with same CATH superfamily
3NKOA 2O3BA 5L0BA 5L0EA 3WAYA 1QL0A 3ISMA 5DLTA 4ZGAA 4A1NA 4ZG6A 4GTWA 3WAVA 5IJSA 2XGRA 5LQQA 4QGOA 3NKPA 5GKCA 5KXAA 1SMNA 4E3YA 5LIAA 1QAEA 1ZM8A 3OWVA 5L0KA 3WAXA 3NKRA 4GTZA 2XRGA 3NKMA 5DLWA 5IJQA 3WAWA 3S5BA 4GTXA 5DLVA 5GKPA 5INHA 3NKQA 4B56A 5HRTA 4ZG7A 3NKNA 4QH0A 2XR9A 4ZG9A 2XH3A 4QN0A 1G8TA 4GTYA
chains in the Genus database with same CATH topology
3NKOA 2O3BA 5L0BA 5L0EA 3WAYA 1QL0A 3ISMA 5DLTA 4ZGAA 4A1NA 4ZG6A 4GTWA 3WAVA 5IJSA 2XGRA 5LQQA 4QGOA 3NKPA 5GKCA 5KXAA 1SMNA 4E3YA 5LIAA 1QAEA 1ZM8A 3OWVA 5L0KA 3WAXA 3NKRA 4GTZA 2XRGA 3NKMA 5DLWA 5IJQA 3WAWA 3S5BA 4GTXA 5DLVA 5GKPA 5INHA 3NKQA 4B56A 5HRTA 4ZG7A 3NKNA 4QH0A 2XR9A 4ZG9A 2XH3A 4QN0A 1G8TA 4GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKO A;  2O3B A;  5L0B A;  5L0E A;  3WAY A;  1QL0 A;  3ISM A;  5DLT A;  4ZGA A;  4A1N A;  4ZG6 A;  4GTW A;  3WAV A;  5IJS A;  2XGR A;  5LQQ A;  4QGO A;  3NKP A;  5GKC A;  5KXA A;  1SMN A;  4E3Y A;  5LIA A;  1QAE A;  1ZM8 A;  3OWV A;  5L0K A;  3WAX A;  3NKR A;  4GTZ A;  2XRG A;  3NKM A;  5DLW A;  5IJQ A;  3WAW A;  3S5B A;  4GTX A;  5DLV A;  5GKP A;  5INH A;  3NKQ A;  4B56 A;  5HRT A;  4ZG7 A;  3NKN A;  4QH0 A;  2XR9 A;  4ZG9 A;  2XH3 A;  4QN0 A;  1G8T A;  4GTY A; 
#chains in the Genus database with same CATH topology
 3NKO A;  2O3B A;  5L0B A;  5L0E A;  3WAY A;  1QL0 A;  3ISM A;  5DLT A;  4ZGA A;  4A1N A;  4ZG6 A;  4GTW A;  3WAV A;  5IJS A;  2XGR A;  5LQQ A;  4QGO A;  3NKP A;  5GKC A;  5KXA A;  1SMN A;  4E3Y A;  5LIA A;  1QAE A;  1ZM8 A;  3OWV A;  5L0K A;  3WAX A;  3NKR A;  4GTZ A;  2XRG A;  3NKM A;  5DLW A;  5IJQ A;  3WAW A;  3S5B A;  4GTX A;  5DLV A;  5GKP A;  5INH A;  3NKQ A;  4B56 A;  5HRT A;  4ZG7 A;  3NKN A;  4QH0 A;  2XR9 A;  4ZG9 A;  2XH3 A;  4QN0 A;  1G8T A;  4GTY A; 
#chains in the Genus database with same CATH homology
 3NKO A;  2O3B A;  5L0B A;  5L0E A;  3WAY A;  1QL0 A;  3ISM A;  5DLT A;  4ZGA A;  4A1N A;  4ZG6 A;  4GTW A;  3WAV A;  5IJS A;  2XGR A;  5LQQ A;  4QGO A;  3NKP A;  5GKC A;  5KXA A;  1SMN A;  4E3Y A;  5LIA A;  1QAE A;  1ZM8 A;  3OWV A;  5L0K A;  3WAX A;  3NKR A;  4GTZ A;  2XRG A;  3NKM A;  5DLW A;  5IJQ A;  3WAW A;  3S5B A;  4GTX A;  5DLV A;  5GKP A;  5INH A;  3NKQ A;  4B56 A;  5HRT A;  4ZG7 A;  3NKN A;  4QH0 A;  2XR9 A;  4ZG9 A;  2XH3 A;  4QN0 A;  1G8T A;  4GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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