3S5BA

Crystal structure of ced-3 protease suppressor-6 (cps-6) from caenorhabditis elegans
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
241
structure length
236
Chain Sequence
PSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into apoptotic DNA degradation by CED-3 protease suppressor-6 (CPS-6) from Caenorhabditis elegans
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Hydrolase
molecule keywords Endonuclease G
total genus 69
structure length 236
sequence length 241
chains with identical sequence B
ec nomenclature ec 3.1.30.-:
pdb deposition date 2011-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 3s5bA00
5LIAA 3WAYA 5L0EA 3NKPA 1QAEA 4ZGAA 5KXAA 1G8TA 5GKCA 3NKRA 4QN0A 1ZM8A 3OWVA 5IJQA 4E3YA 2O3BA 3WAWA 4GTXA 5HRTA 4ZG9A 5DLTA 4QH0A 1QL0A 3NKQA 3ISMA 4QGOA 5DLWA 3NKOA 4A1NA 4GTZA 4GTWA 5LQQA 3WAVA 4ZG7A 3NKMA 4ZG6A 5IJSA 2XH3A 5GKPA 2XR9A 5DLVA 3S5BA 5L0KA 1SMNA 4GTYA 5L0BA 2XRGA 4B56A 2XGRA 3WAXA 5INHA 3NKNA
chains in the Genus database with same CATH superfamily
5LIAA 3WAYA 5L0EA 3NKPA 1QAEA 4ZGAA 5KXAA 1G8TA 5GKCA 3NKRA 4QN0A 1ZM8A 3OWVA 5IJQA 4E3YA 2O3BA 3WAWA 4GTXA 5HRTA 4ZG9A 5DLTA 4QH0A 1QL0A 3NKQA 3ISMA 4QGOA 5DLWA 3NKOA 4A1NA 4GTZA 4GTWA 5LQQA 3WAVA 4ZG7A 3NKMA 4ZG6A 5IJSA 2XH3A 5GKPA 2XR9A 5DLVA 3S5BA 5L0KA 1SMNA 4GTYA 5L0BA 2XRGA 4B56A 2XGRA 3WAXA 5INHA 3NKNA
chains in the Genus database with same CATH topology
5LIAA 3WAYA 5L0EA 3NKPA 1QAEA 4ZGAA 5KXAA 1G8TA 5GKCA 3NKRA 4QN0A 1ZM8A 3OWVA 5IJQA 4E3YA 2O3BA 3WAWA 4GTXA 5HRTA 4ZG9A 5DLTA 4QH0A 1QL0A 3NKQA 3ISMA 4QGOA 5DLWA 3NKOA 4A1NA 4GTZA 4GTWA 5LQQA 3WAVA 4ZG7A 3NKMA 4ZG6A 5IJSA 2XH3A 5GKPA 2XR9A 5DLVA 3S5BA 5L0KA 1SMNA 4GTYA 5L0BA 2XRGA 4B56A 2XGRA 3WAXA 5INHA 3NKNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LIA A;  3WAY A;  5L0E A;  3NKP A;  1QAE A;  4ZGA A;  5KXA A;  1G8T A;  5GKC A;  3NKR A;  4QN0 A;  1ZM8 A;  3OWV A;  5IJQ A;  4E3Y A;  2O3B A;  3WAW A;  4GTX A;  5HRT A;  4ZG9 A;  5DLT A;  4QH0 A;  1QL0 A;  3NKQ A;  3ISM A;  4QGO A;  5DLW A;  3NKO A;  4A1N A;  4GTZ A;  4GTW A;  5LQQ A;  3WAV A;  4ZG7 A;  3NKM A;  4ZG6 A;  5IJS A;  2XH3 A;  5GKP A;  2XR9 A;  5DLV A;  3S5B A;  5L0K A;  1SMN A;  4GTY A;  5L0B A;  2XRG A;  4B56 A;  2XGR A;  3WAX A;  5INH A;  3NKN A; 
#chains in the Genus database with same CATH topology
 5LIA A;  3WAY A;  5L0E A;  3NKP A;  1QAE A;  4ZGA A;  5KXA A;  1G8T A;  5GKC A;  3NKR A;  4QN0 A;  1ZM8 A;  3OWV A;  5IJQ A;  4E3Y A;  2O3B A;  3WAW A;  4GTX A;  5HRT A;  4ZG9 A;  5DLT A;  4QH0 A;  1QL0 A;  3NKQ A;  3ISM A;  4QGO A;  5DLW A;  3NKO A;  4A1N A;  4GTZ A;  4GTW A;  5LQQ A;  3WAV A;  4ZG7 A;  3NKM A;  4ZG6 A;  5IJS A;  2XH3 A;  5GKP A;  2XR9 A;  5DLV A;  3S5B A;  5L0K A;  1SMN A;  4GTY A;  5L0B A;  2XRG A;  4B56 A;  2XGR A;  3WAX A;  5INH A;  3NKN A; 
#chains in the Genus database with same CATH homology
 5LIA A;  3WAY A;  5L0E A;  3NKP A;  1QAE A;  4ZGA A;  5KXA A;  1G8T A;  5GKC A;  3NKR A;  4QN0 A;  1ZM8 A;  3OWV A;  5IJQ A;  4E3Y A;  2O3B A;  3WAW A;  4GTX A;  5HRT A;  4ZG9 A;  5DLT A;  4QH0 A;  1QL0 A;  3NKQ A;  3ISM A;  4QGO A;  5DLW A;  3NKO A;  4A1N A;  4GTZ A;  4GTW A;  5LQQ A;  3WAV A;  4ZG7 A;  3NKM A;  4ZG6 A;  5IJS A;  2XH3 A;  5GKP A;  2XR9 A;  5DLV A;  3S5B A;  5L0K A;  1SMN A;  4GTY A;  5L0B A;  2XRG A;  4B56 A;  2XGR A;  3WAX A;  5INH A;  3NKN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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