3OWVA

Structural insights into catalytic and substrate binding mechanisms of the strategic enda nuclease from streptococcus pneumoniae
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
229
structure length
218
Chain Sequence
SEAPSQALAESVLTDAVKSQIKGSLEWNGSGAFIVNGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANALLSKATRQYSWTPPGWHQVKNLKGSYTHAVDRGALLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEYSTGQNYYESKVRKALDQNKRVRYRVTLYYASNEDLVPSASQIEAKSSDGELEFNVLVPNVQKGLQLDYRTGEVTVTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-entry nuclease
publication title Structural insights into catalytic and substrate binding mechanisms of the strategic EndA nuclease from Streptococcus pneumoniae.
pubmed doi rcsb
source organism Streptococcus pneumoniae
molecule tags Hydrolase
total genus 59
structure length 218
sequence length 229
chains with identical sequence B
ec nomenclature ec 3.1.30.-:
pdb deposition date 2010-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 3owvA00
4ZG9A 1QAEA 1ZM8A 5L0EA 5HRTA 3ISMA 3OWVA 4ZG6A 3WAXA 4B56A 5GKCA 5LIAA 5DLVA 5GKPA 4GTWA 5DLTA 2XR9A 4GTZA 4QN0A 3WAYA 5IJQA 5DLWA 5KXAA 4E3YA 4A1NA 3WAVA 4QGOA 1QL0A 4ZG7A 2XRGA 3NKQA 4GTXA 3NKNA 4QH0A 5L0KA 5LQQA 2O3BA 4GTYA 1SMNA 4ZGAA 5INHA 3NKMA 3NKPA 5L0BA 3S5BA 3WAWA 2XGRA 3NKOA 3NKRA 1G8TA 2XH3A 5IJSA
chains in the Genus database with same CATH superfamily
4ZG9A 1QAEA 1ZM8A 5L0EA 5HRTA 3ISMA 3OWVA 4ZG6A 3WAXA 4B56A 5GKCA 5LIAA 5DLVA 5GKPA 4GTWA 5DLTA 2XR9A 4GTZA 4QN0A 3WAYA 5IJQA 5DLWA 5KXAA 4E3YA 4A1NA 3WAVA 4QGOA 1QL0A 4ZG7A 2XRGA 3NKQA 4GTXA 3NKNA 4QH0A 5L0KA 5LQQA 2O3BA 4GTYA 1SMNA 4ZGAA 5INHA 3NKMA 3NKPA 5L0BA 3S5BA 3WAWA 2XGRA 3NKOA 3NKRA 1G8TA 2XH3A 5IJSA
chains in the Genus database with same CATH topology
4ZG9A 1QAEA 1ZM8A 5L0EA 5HRTA 3ISMA 3OWVA 4ZG6A 3WAXA 4B56A 5GKCA 5LIAA 5DLVA 5GKPA 4GTWA 5DLTA 2XR9A 4GTZA 4QN0A 3WAYA 5IJQA 5DLWA 5KXAA 4E3YA 4A1NA 3WAVA 4QGOA 1QL0A 4ZG7A 2XRGA 3NKQA 4GTXA 3NKNA 4QH0A 5L0KA 5LQQA 2O3BA 4GTYA 1SMNA 4ZGAA 5INHA 3NKMA 3NKPA 5L0BA 3S5BA 3WAWA 2XGRA 3NKOA 3NKRA 1G8TA 2XH3A 5IJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZG9 A;  1QAE A;  1ZM8 A;  5L0E A;  5HRT A;  3ISM A;  3OWV A;  4ZG6 A;  3WAX A;  4B56 A;  5GKC A;  5LIA A;  5DLV A;  5GKP A;  4GTW A;  5DLT A;  2XR9 A;  4GTZ A;  4QN0 A;  3WAY A;  5IJQ A;  5DLW A;  5KXA A;  4E3Y A;  4A1N A;  3WAV A;  4QGO A;  1QL0 A;  4ZG7 A;  2XRG A;  3NKQ A;  4GTX A;  3NKN A;  4QH0 A;  5L0K A;  5LQQ A;  2O3B A;  4GTY A;  1SMN A;  4ZGA A;  5INH A;  3NKM A;  3NKP A;  5L0B A;  3S5B A;  3WAW A;  2XGR A;  3NKO A;  3NKR A;  1G8T A;  2XH3 A;  5IJS A; 
#chains in the Genus database with same CATH topology
 4ZG9 A;  1QAE A;  1ZM8 A;  5L0E A;  5HRT A;  3ISM A;  3OWV A;  4ZG6 A;  3WAX A;  4B56 A;  5GKC A;  5LIA A;  5DLV A;  5GKP A;  4GTW A;  5DLT A;  2XR9 A;  4GTZ A;  4QN0 A;  3WAY A;  5IJQ A;  5DLW A;  5KXA A;  4E3Y A;  4A1N A;  3WAV A;  4QGO A;  1QL0 A;  4ZG7 A;  2XRG A;  3NKQ A;  4GTX A;  3NKN A;  4QH0 A;  5L0K A;  5LQQ A;  2O3B A;  4GTY A;  1SMN A;  4ZGA A;  5INH A;  3NKM A;  3NKP A;  5L0B A;  3S5B A;  3WAW A;  2XGR A;  3NKO A;  3NKR A;  1G8T A;  2XH3 A;  5IJS A; 
#chains in the Genus database with same CATH homology
 4ZG9 A;  1QAE A;  1ZM8 A;  5L0E A;  5HRT A;  3ISM A;  3OWV A;  4ZG6 A;  3WAX A;  4B56 A;  5GKC A;  5LIA A;  5DLV A;  5GKP A;  4GTW A;  5DLT A;  2XR9 A;  4GTZ A;  4QN0 A;  3WAY A;  5IJQ A;  5DLW A;  5KXA A;  4E3Y A;  4A1N A;  3WAV A;  4QGO A;  1QL0 A;  4ZG7 A;  2XRG A;  3NKQ A;  4GTX A;  3NKN A;  4QH0 A;  5L0K A;  5LQQ A;  2O3B A;  4GTY A;  1SMN A;  4ZGA A;  5INH A;  3NKM A;  3NKP A;  5L0B A;  3S5B A;  3WAW A;  2XGR A;  3NKO A;  3NKR A;  1G8T A;  2XH3 A;  5IJS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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