1XAO | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	121
structure length	115
Chain Sequence	SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDECVLADFDPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 115 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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115 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Chaperone
source organism	Saccharomyces cerevisiae
publication title	The crystal structure of the C-terminal fragment of yeast Hsp40 Ydj1 reveals novel dimerization motif for Hsp40 pubmed doi rcsb
molecule keywords	Mitochondrial protein import protein MAS5
total genus	17
structure length	115
sequence length	121
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-08-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	1xaoA01

1GMWA 3LA0A 2Q2GA 4J80A 4L3KA 2B26A 1NLTA 1EARA 2QLDA 3AGYA 1XAOA 1GMWD 3L9ZA 3LZ8A 1GMVA 3TJAA 3I38A 1GMUA 1C3GA 3AGZA 3TJ9A 3AGXA 1EB0A 3TJ8A 3NY0A 3NXZA
chains in the Genus database with same CATH superfamily

1GMWA 3LA0A 2Q2GA 4J80A 4L3KA 2B26A 1NLTA 1EARA 2ODXA 2QLDA 3C6EC 3AGYA 1XAOA 1GMWD 3L9ZA 3AKOB 2JVMA 2JZ8A 3LZ8A 1GMVA 3TJAA 1GMUA 1C3GA 3C5XC 3I38A 3AGZA 3TJ9A 2JRRA 3AGXA 1EB0A 3TJ8A 3NY0A 3NXZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GMW A;  3LA0 A;  2Q2G A;  4J80 A;  4L3K A;  2B26 A;  1NLT A;  1EAR A;  2QLD A;  3AGY A;  1XAO A;  1GMW D;  3L9Z A;  3LZ8 A;  1GMV A;  3TJA A;  3I38 A;  1GMU A;  1C3G A;  3AGZ A;  3TJ9 A;  3AGX A;  1EB0 A;  3TJ8 A;  3NY0 A;  3NXZ A; 
#chains in the Genus database with same CATH topology
 1GMW A;  3LA0 A;  2Q2G A;  4J80 A;  4L3K A;  2B26 A;  1NLT A;  1EAR A;  2ODX A;  2QLD A;  3C6E C;  3AGY A;  1XAO A;  1GMW D;  3L9Z A;  3AKO B;  2JVM A;  2JZ8 A;  3LZ8 A;  1GMV A;  3TJA A;  1GMU A;  1C3G A;  3C5X C;  3I38 A;  3AGZ A;  3TJ9 A;  2JRR A;  3AGX A;  1EB0 A;  3TJ8 A;  3NY0 A;  3NXZ A; 
#chains in the Genus database with same CATH homology
 1GMW A;  3LA0 A;  2Q2G A;  4J80 A;  4L3K A;  2B26 A;  1NLT A;  1EAR A;  2QLD A;  3AGY A;  1XAO A;  1GMW D;  3L9Z A;  3LZ8 A;  1GMV A;  3TJA A;  3I38 A;  1GMU A;  1C3G A;  3AGZ A;  3TJ9 A;  3AGX A;  1EB0 A;  3TJ8 A;  3NY0 A;  3NXZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1XAOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization