2B26A

The crystal structure of the protein complex of yeast hsp40 sis1 and hsp70 ssa1
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
170
structure length
157
Chain Sequence
ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex.
pubmed doi rcsb
molecule tags Chaperone/protein transport
source organism Saccharomyces cerevisiae
molecule keywords SIS1 protein
total genus 27
structure length 157
sequence length 170
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2b26A01
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2b26A02
1C3GA 3L9ZA 3I38A 1EB0A 3NXZA 1GMWA 1GMUA 3LA0A 3TJ8A 4L3KA 3NY0A 1GMVA 3TJAA 3LZ8A 1NLTA 1XAOA 1GMWD 2B26A 3AGZA 4J80A 2QLDA 1EARA 3AGYA 2Q2GA 3TJ9A 3AGXA
chains in the Genus database with same CATH superfamily
1C3GA 3L9ZA 3I38A 1EB0A 3NXZA 1GMWA 2ODXA 1GMUA 2JZ8A 3LA0A 3TJ8A 4L3KA 3AKOB 3NY0A 1GMVA 3TJAA 3LZ8A 1NLTA 1XAOA 1GMWD 2B26A 2JVMA 3AGZA 4J80A 2QLDA 1EARA 3AGYA 2Q2GA 3C6EC 3AGXA 3TJ9A 3C5XC 2JRRA
chains in the Genus database with same CATH topology
1C3GA 3L9ZA 3I38A 1EB0A 3NXZA 1GMWA 1GMUA 3LA0A 3TJ8A 4L3KA 3NY0A 1GMVA 3TJAA 3LZ8A 1NLTA 1XAOA 1GMWD 2B26A 3AGZA 4J80A 2QLDA 1EARA 3AGYA 2Q2GA 3TJ9A 3AGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3G A;  3L9Z A;  3I38 A;  1EB0 A;  3NXZ A;  1GMW A;  1GMU A;  3LA0 A;  3TJ8 A;  4L3K A;  3NY0 A;  1GMV A;  3TJA A;  3LZ8 A;  1NLT A;  1XAO A;  1GMW D;  2B26 A;  3AGZ A;  4J80 A;  2QLD A;  1EAR A;  3AGY A;  2Q2G A;  3TJ9 A;  3AGX A; 
#chains in the Genus database with same CATH topology
 1C3G A;  3L9Z A;  3I38 A;  1EB0 A;  3NXZ A;  1GMW A;  2ODX A;  1GMU A;  2JZ8 A;  3LA0 A;  3TJ8 A;  4L3K A;  3AKO B;  3NY0 A;  1GMV A;  3TJA A;  3LZ8 A;  1NLT A;  1XAO A;  1GMW D;  2B26 A;  2JVM A;  3AGZ A;  4J80 A;  2QLD A;  1EAR A;  3AGY A;  2Q2G A;  3C6E C;  3AGX A;  3TJ9 A;  3C5X C;  2JRR A; 
#chains in the Genus database with same CATH homology
 1C3G A;  3L9Z A;  3I38 A;  1EB0 A;  3NXZ A;  1GMW A;  1GMU A;  3LA0 A;  3TJ8 A;  4L3K A;  3NY0 A;  1GMV A;  3TJA A;  3LZ8 A;  1NLT A;  1XAO A;  1GMW D;  2B26 A;  3AGZ A;  4J80 A;  2QLD A;  1EAR A;  3AGY A;  2Q2G A;  3TJ9 A;  3AGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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