2B26 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	170
structure length	157
Chain Sequence	ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 157 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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157 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Chaperone/protein transport
source organism	Saccharomyces cerevisiae
publication title	Crystal structure of yeast Sis1 peptide-binding fragment and Hsp70 Ssa1 C-terminal complex. pubmed doi rcsb
molecule keywords	SIS1 protein
total genus	27
structure length	157
sequence length	170
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2005-09-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	2b26A01
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	2b26A02

1NLTA 1GMUA 3LA0A 3AGYA 2QLDA 3TJAA 4L3KA 1C3GA 3NY0A 3TJ9A 3TJ8A 1GMVA 2Q2GA 3AGXA 1GMWD 3NXZA 1XAOA 1GMWA 4J80A 1EB0A 2B26A 1EARA 3LZ8A 3I38A 3L9ZA 3AGZA
chains in the Genus database with same CATH superfamily

1NLTA 1GMUA 3LA0A 3AGYA 2QLDA 2JZ8A 3TJAA 4L3KA 1C3GA 3NY0A 3TJ9A 3TJ8A 1GMVA 3C5XC 2JVMA 2Q2GA 3AKOB 3AGXA 1GMWD 3NXZA 1XAOA 2ODXA 1GMWA 4J80A 1EB0A 2B26A 3C6EC 1EARA 2JRRA 3LZ8A 3I38A 3L9ZA 3AGZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NLT A;  1GMU A;  3LA0 A;  3AGY A;  2QLD A;  3TJA A;  4L3K A;  1C3G A;  3NY0 A;  3TJ9 A;  3TJ8 A;  1GMV A;  2Q2G A;  3AGX A;  1GMW D;  3NXZ A;  1XAO A;  1GMW A;  4J80 A;  1EB0 A;  2B26 A;  1EAR A;  3LZ8 A;  3I38 A;  3L9Z A;  3AGZ A; 
#chains in the Genus database with same CATH topology
 1NLT A;  1GMU A;  3LA0 A;  3AGY A;  2QLD A;  2JZ8 A;  3TJA A;  4L3K A;  1C3G A;  3NY0 A;  3TJ9 A;  3TJ8 A;  1GMV A;  3C5X C;  2JVM A;  2Q2G A;  3AKO B;  3AGX A;  1GMW D;  3NXZ A;  1XAO A;  2ODX A;  1GMW A;  4J80 A;  1EB0 A;  2B26 A;  3C6E C;  1EAR A;  2JRR A;  3LZ8 A;  3I38 A;  3L9Z A;  3AGZ A; 
#chains in the Genus database with same CATH homology
 1NLT A;  1GMU A;  3LA0 A;  3AGY A;  2QLD A;  3TJA A;  4L3K A;  1C3G A;  3NY0 A;  3TJ9 A;  3TJ8 A;  1GMV A;  2Q2G A;  3AGX A;  1GMW D;  3NXZ A;  1XAO A;  1GMW A;  4J80 A;  1EB0 A;  2B26 A;  1EAR A;  3LZ8 A;  3I38 A;  3L9Z A;  3AGZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2B26A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations