2H9GR

Crystal structure of phage derived fab bdf1 with human death receptor 5 (dr5)
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
108
structure length
108
Chain Sequence
SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
Updating...
connected with : NaN
molecule tags Immune system/apoptosis
source organism Homo sapiens
publication title Activation of the Proapoptotic Death Receptor DR5 by Oligomeric Peptide and Antibody Agonists.
pubmed doi rcsb
molecule keywords Fab BdF1, light chain
total genus 15
structure length 108
sequence length 108
chains with identical sequence S
ec nomenclature
pdb deposition date 2006-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2h9gR01
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2h9gR02
4FHQA 1SG1X 4J6GC 3X3FA 4I9XC 4GIQR 4KGGC 3K51B 4MSVB 2X10A 3IJ2X 3U3PA 3QBQB 5IHLA 4M4PA 3FL7A 4OD2S 2AW2B 3U3TA 3MI8D 3QD6R 3QO4A 5DMJA 3U3SA 3ALQR 4BK5A 3ME4A 4YN0A 4KGQC 2UWIA 4M4RA 5CIRE 3U3QA 3WVTA 5L36B 1ZA3R 1EXTA 1D0GR 2HEVR 3URFZ 4MXWR 2HEYR 3MBWA 4BK4A 2H9GR 3THMF 1FT4A 3BUKC 3ME2R 5BNQR 1NCFA 3MHDD 4E4DR 4RSUD 3U3VA 1JMAB 3TJEF 1TNRR 4N90R 1DU3A 1D4VA
chains in the Genus database with same CATH superfamily
4FHQA 1SG1X 4J6GC 3X3FA 2E4WA 4I9XC 4GIQR 4KGGC 3K51B 4MSVB 2X10A 3IJ2X 3U3PA 3QBQB 5IHLA 2E4XA 3FL7A 4M4PA 4OD2S 2AW2B 3U3TA 3MI8D 2E4VA 3QD6R 3QO4A 5DMJA 3U3SA 3ALQR 4BK5A 3ME4A 4YN0A 4KGQC 2UWIA 4M4RA 5CIRE 3U3QA 3WVTA 5L36B 1ZA3R 2E4UA 1EXTA 1D0GR 2E4YA 2HEVR 3URFZ 4MXWR 2HEYR 3MBWA 4BK4A 2H9GR 3THMF 1FT4A 3BUKC 3ME2R 5BNQR 1NCFA 3MHDD 4E4DR 4RSUD 3U3VA 1JMAB 3TJEF 1TNRR 4N90R 2QR6A 1DU3A 1D4VA
chains in the Genus database with same CATH topology
4FHQA 1SG1X 4J6GC 3X3FA 4I9XC 4GIQR 4KGGC 3K51B 4MSVB 2X10A 3IJ2X 3U3PA 3QBQB 5IHLA 4M4PA 3FL7A 4OD2S 2AW2B 3U3TA 3MI8D 3QD6R 3QO4A 5DMJA 3U3SA 3ALQR 4BK5A 3ME4A 4YN0A 4KGQC 2UWIA 4M4RA 5CIRE 3U3QA 3WVTA 5L36B 1ZA3R 1EXTA 1D0GR 2HEVR 3URFZ 4MXWR 2HEYR 3MBWA 4BK4A 2H9GR 3THMF 1FT4A 3BUKC 3ME2R 5BNQR 1NCFA 3MHDD 4E4DR 4RSUD 3U3VA 1JMAB 3TJEF 1TNRR 4N90R 1DU3A 1D4VA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4FHQ A;  1SG1 X;  4J6G C;  3X3F A;  4I9X C;  4GIQ R;  4KGG C;  3K51 B;  4MSV B;  2X10 A;  3IJ2 X;  3U3P A;  3QBQ B;  5IHL A;  4M4P A;  3FL7 A;  4OD2 S;  2AW2 B;  3U3T A;  3MI8 D;  3QD6 R;  3QO4 A;  5DMJ A;  3U3S A;  3ALQ R;  4BK5 A;  3ME4 A;  4YN0 A;  4KGQ C;  2UWI A;  4M4R A;  5CIR E;  3U3Q A;  3WVT A;  5L36 B;  1ZA3 R;  1EXT A;  1D0G R;  2HEV R;  3URF Z;  4MXW R;  2HEY R;  3MBW A;  4BK4 A;  2H9G R;  3THM F;  1FT4 A;  3BUK C;  3ME2 R;  5BNQ R;  1NCF A;  3MHD D;  4E4D R;  4RSU D;  3U3V A;  1JMA B;  3TJE F;  1TNR R;  4N90 R;  1DU3 A;  1D4V A; 
#chains in the Genus database with same CATH topology
 4FHQ A;  1SG1 X;  4J6G C;  3X3F A;  2E4W A;  4I9X C;  4GIQ R;  4KGG C;  3K51 B;  4MSV B;  2X10 A;  3IJ2 X;  3U3P A;  3QBQ B;  5IHL A;  2E4X A;  3FL7 A;  4M4P A;  4OD2 S;  2AW2 B;  3U3T A;  3MI8 D;  2E4V A;  3QD6 R;  3QO4 A;  5DMJ A;  3U3S A;  3ALQ R;  4BK5 A;  3ME4 A;  4YN0 A;  4KGQ C;  2UWI A;  4M4R A;  5CIR E;  3U3Q A;  3WVT A;  5L36 B;  1ZA3 R;  2E4U A;  1EXT A;  1D0G R;  2E4Y A;  2HEV R;  3URF Z;  4MXW R;  2HEY R;  3MBW A;  4BK4 A;  2H9G R;  3THM F;  1FT4 A;  3BUK C;  3ME2 R;  5BNQ R;  1NCF A;  3MHD D;  4E4D R;  4RSU D;  3U3V A;  1JMA B;  3TJE F;  1TNR R;  4N90 R;  2QR6 A;  1DU3 A;  1D4V A; 
#chains in the Genus database with same CATH homology
 4FHQ A;  1SG1 X;  4J6G C;  3X3F A;  4I9X C;  4GIQ R;  4KGG C;  3K51 B;  4MSV B;  2X10 A;  3IJ2 X;  3U3P A;  3QBQ B;  5IHL A;  4M4P A;  3FL7 A;  4OD2 S;  2AW2 B;  3U3T A;  3MI8 D;  3QD6 R;  3QO4 A;  5DMJ A;  3U3S A;  3ALQ R;  4BK5 A;  3ME4 A;  4YN0 A;  4KGQ C;  2UWI A;  4M4R A;  5CIR E;  3U3Q A;  3WVT A;  5L36 B;  1ZA3 R;  1EXT A;  1D0G R;  2HEV R;  3URF Z;  4MXW R;  2HEY R;  3MBW A;  4BK4 A;  2H9G R;  3THM F;  1FT4 A;  3BUK C;  3ME2 R;  5BNQ R;  1NCF A;  3MHD D;  4E4D R;  4RSU D;  3U3V A;  1JMA B;  3TJE F;  1TNR R;  4N90 R;  1DU3 A;  1D4V A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.