2HEYR

Crystal structure of murine ox40l bound to human ox40
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
138
structure length
138
Chain Sequence
LHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAIC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTII1 (47-50)TI'1 (38-41)O6 (31-42)O2 (70-163)S2 (41-44)O7 (43-56)S3 (50-54)O8 (46-64)S4 (63-66)S6 (82-83)O1 (87-89)S7 (93-97)3H1 (89-91)TII3 (110-113)S8 (106-109)S11 (132-133)TIV2 (117-120)TII4 (120-123)TVIII1 (122-125)S10 (125-127)TI'2 (136-139)TII5 (129-132)TI1 (57-60)TII2 (68-71)S5 (71-72)S9 (113-115)TIV1 (32-35)S1 (35-38)TI2 (100-103)Updating...
connected with : NaN
molecule tags Cytokine
source organism Mus musculus
publication title The Crystal Structure of the Costimulatory OX40-OX40L Complex.
pubmed doi rcsb
molecule keywords Tumor necrosis factor ligand superfamily member 4
total genus 28
structure length 138
sequence length 138
chains with identical sequence T
ec nomenclature
pdb deposition date 2006-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2heyR02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 2heyR01
5IHLA 4KGGC 4RSUD 3BUKC 1TNRR 2AW2B 1JMAB 3ALQR 1D0GR 4MXWR 3URFZ 4BK5A 3MI8D 3QO4A 5DMJA 5L36B 4I9XC 3FL7A 3U3QA 2H9GR 3U3PA 4M4RA 4BK4A 4MSVB 3QD6R 2X10A 5CIRE 1ZA3R 3U3VA 3ME4A 4M4PA 4E4DR 2UWIA 3MHDD 5BNQR 2HEVR 3U3SA 4KGQC 4FHQA 4N90R 3K51B 4GIQR 3QBQB 3X3FA 1FT4A 1SG1X 3U3TA 3WVTA 1DU3A 1D4VA 3MBWA 1NCFA 4OD2S 3TJEF 2HEYR 4J6GC 3THMF 3ME2R 4YN0A 3IJ2X 1EXTA
chains in the Genus database with same CATH superfamily
2E4UA 5IHLA 4KGGC 4RSUD 3BUKC 1TNRR 2AW2B 1JMAB 3ALQR 1D0GR 4MXWR 3URFZ 4BK5A 3MI8D 3QO4A 5DMJA 5L36B 4I9XC 3FL7A 3U3QA 2H9GR 3U3PA 4M4RA 4BK4A 4MSVB 2E4YA 2E4WA 2X10A 3QD6R 5CIRE 1ZA3R 3U3VA 2QR6A 3ME4A 2E4XA 4M4PA 4E4DR 2UWIA 3MHDD 5BNQR 2HEVR 3U3SA 4KGQC 4FHQA 4N90R 3K51B 4GIQR 3QBQB 3X3FA 1FT4A 1SG1X 3U3TA 3WVTA 2E4VA 1DU3A 1D4VA 3MBWA 1NCFA 4OD2S 3TJEF 2HEYR 4J6GC 3THMF 3ME2R 4YN0A 3IJ2X 1EXTA
chains in the Genus database with same CATH topology
5IHLA 4KGGC 4RSUD 3BUKC 1TNRR 2AW2B 1JMAB 3ALQR 1D0GR 4MXWR 3URFZ 4BK5A 3MI8D 3QO4A 5DMJA 5L36B 4I9XC 3FL7A 3U3QA 2H9GR 3U3PA 4M4RA 4BK4A 4MSVB 3QD6R 2X10A 5CIRE 1ZA3R 3U3VA 3ME4A 4M4PA 4E4DR 2UWIA 3MHDD 5BNQR 2HEVR 3U3SA 4KGQC 4FHQA 4N90R 3K51B 4GIQR 3QBQB 3X3FA 1FT4A 1SG1X 3U3TA 3WVTA 1DU3A 1D4VA 3MBWA 1NCFA 4OD2S 3TJEF 2HEYR 4J6GC 3THMF 3ME2R 4YN0A 3IJ2X 1EXTA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5IHL A;  4KGG C;  4RSU D;  3BUK C;  1TNR R;  2AW2 B;  1JMA B;  3ALQ R;  1D0G R;  4MXW R;  3URF Z;  4BK5 A;  3MI8 D;  3QO4 A;  5DMJ A;  5L36 B;  4I9X C;  3FL7 A;  3U3Q A;  2H9G R;  3U3P A;  4M4R A;  4BK4 A;  4MSV B;  3QD6 R;  2X10 A;  5CIR E;  1ZA3 R;  3U3V A;  3ME4 A;  4M4P A;  4E4D R;  2UWI A;  3MHD D;  5BNQ R;  2HEV R;  3U3S A;  4KGQ C;  4FHQ A;  4N90 R;  3K51 B;  4GIQ R;  3QBQ B;  3X3F A;  1FT4 A;  1SG1 X;  3U3T A;  3WVT A;  1DU3 A;  1D4V A;  3MBW A;  1NCF A;  4OD2 S;  3TJE F;  2HEY R;  4J6G C;  3THM F;  3ME2 R;  4YN0 A;  3IJ2 X;  1EXT A; 
#chains in the Genus database with same CATH topology
 2E4U A;  5IHL A;  4KGG C;  4RSU D;  3BUK C;  1TNR R;  2AW2 B;  1JMA B;  3ALQ R;  1D0G R;  4MXW R;  3URF Z;  4BK5 A;  3MI8 D;  3QO4 A;  5DMJ A;  5L36 B;  4I9X C;  3FL7 A;  3U3Q A;  2H9G R;  3U3P A;  4M4R A;  4BK4 A;  4MSV B;  2E4Y A;  2E4W A;  2X10 A;  3QD6 R;  5CIR E;  1ZA3 R;  3U3V A;  2QR6 A;  3ME4 A;  2E4X A;  4M4P A;  4E4D R;  2UWI A;  3MHD D;  5BNQ R;  2HEV R;  3U3S A;  4KGQ C;  4FHQ A;  4N90 R;  3K51 B;  4GIQ R;  3QBQ B;  3X3F A;  1FT4 A;  1SG1 X;  3U3T A;  3WVT A;  2E4V A;  1DU3 A;  1D4V A;  3MBW A;  1NCF A;  4OD2 S;  3TJE F;  2HEY R;  4J6G C;  3THM F;  3ME2 R;  4YN0 A;  3IJ2 X;  1EXT A; 
#chains in the Genus database with same CATH homology
 5IHL A;  4KGG C;  4RSU D;  3BUK C;  1TNR R;  2AW2 B;  1JMA B;  3ALQ R;  1D0G R;  4MXW R;  3URF Z;  4BK5 A;  3MI8 D;  3QO4 A;  5DMJ A;  5L36 B;  4I9X C;  3FL7 A;  3U3Q A;  2H9G R;  3U3P A;  4M4R A;  4BK4 A;  4MSV B;  3QD6 R;  2X10 A;  5CIR E;  1ZA3 R;  3U3V A;  3ME4 A;  4M4P A;  4E4D R;  2UWI A;  3MHD D;  5BNQ R;  2HEV R;  3U3S A;  4KGQ C;  4FHQ A;  4N90 R;  3K51 B;  4GIQ R;  3QBQ B;  3X3F A;  1FT4 A;  1SG1 X;  3U3T A;  3WVT A;  1DU3 A;  1D4V A;  3MBW A;  1NCF A;  4OD2 S;  3TJE F;  2HEY R;  4J6G C;  3THM F;  3ME2 R;  4YN0 A;  3IJ2 X;  1EXT A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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