2JRR | Genus

Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	6
sequence length	67
structure length	67
Chain Sequence	MTIQAPETKIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADALEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 67 atoms

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67 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Silicibacter pomeroyi
publication title	Solution NMR Structure of Q5LLS5 from Silicibacter pomeroyi. rcsb
molecule keywords	Uncharacterized protein
total genus	6
structure length	67
sequence length	67
ec nomenclature
pdb deposition date	2007-06-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10276	zf-CHCC	Zinc-finger domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.40	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	q5lls5 like domains	2jrrA01

2JZ8A 2JRRA 2ODXA 2JVMA
chains in the Genus database with same CATH superfamily

3AGXA 3NXZA 2JVMA 3C5XC 2QLDA 3I38A 3L9ZA 2ODXA 4J80A 3C6EC 2JZ8A 3AKOB 3TJ8A 3TJ9A 2B26A 1GMUA 1NLTA 2Q2GA 3AGYA 1C3GA 3NY0A 1GMWD 4L3KA 1XAOA 1EARA 1GMVA 2JRRA 3LZ8A 3AGZA 3LA0A 3TJAA 1GMWA 1EB0A
chains in the Genus database with same CATH topology

2JZ8A 2JRRA 2ODXA 2JVMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JZ8 A;  2JRR A;  2ODX A;  2JVM A; 
#chains in the Genus database with same CATH topology
 3AGX A;  3NXZ A;  2JVM A;  3C5X C;  2QLD A;  3I38 A;  3L9Z A;  2ODX A;  4J80 A;  3C6E C;  2JZ8 A;  3AKO B;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  2Q2G A;  3AGY A;  1C3G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  2JRR A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A; 
#chains in the Genus database with same CATH homology
 2JZ8 A;  2JRR A;  2ODX A;  2JVM A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2JRRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations