2JVM | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	80
structure length	80
Chain Sequence	MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLEHHHHHH

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Rhodobacter sphaeroides 2.4.1
publication title	Solution NMR Structure of Rhodobacter sphaeroides protein RHOS4_26430. rcsb
molecule keywords	Uncharacterized protein
total genus	7
structure length	80
sequence length	80
ec nomenclature
pdb deposition date	2007-09-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10276	zf-CHCC	Zinc-finger domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.40	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	q5lls5 like domains	2jvmA01

2JRRA 2JVMA 2JZ8A 2ODXA
chains in the Genus database with same CATH superfamily

1NLTA 1GMUA 3LA0A 3AGYA 2QLDA 2JZ8A 3TJAA 4L3KA 1C3GA 3NY0A 3TJ9A 3TJ8A 1GMVA 3C5XC 2JVMA 2Q2GA 3AKOB 3AGXA 1GMWD 3NXZA 1XAOA 2ODXA 1GMWA 4J80A 1EB0A 2B26A 3C6EC 1EARA 2JRRA 3LZ8A 3I38A 3L9ZA 3AGZA
chains in the Genus database with same CATH topology

2JRRA 2JVMA 2JZ8A 2ODXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JRR A;  2JVM A;  2JZ8 A;  2ODX A; 
#chains in the Genus database with same CATH topology
 1NLT A;  1GMU A;  3LA0 A;  3AGY A;  2QLD A;  2JZ8 A;  3TJA A;  4L3K A;  1C3G A;  3NY0 A;  3TJ9 A;  3TJ8 A;  1GMV A;  3C5X C;  2JVM A;  2Q2G A;  3AKO B;  3AGX A;  1GMW D;  3NXZ A;  1XAO A;  2ODX A;  1GMW A;  4J80 A;  1EB0 A;  2B26 A;  3C6E C;  1EAR A;  2JRR A;  3LZ8 A;  3I38 A;  3L9Z A;  3AGZ A; 
#chains in the Genus database with same CATH homology
 2JRR A;  2JVM A;  2JZ8 A;  2ODX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2JVMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations