2JZ8 | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	87
structure length	87
Chain Sequence	MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDPSLSYNQTNPTGCLYNPKLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 87 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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87 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Bartonella henselae str. houston-1
publication title	Solution NMR structure of BH09830 from Bartonella henselae modeled with one Zn+2 bound. rcsb
molecule keywords	Uncharacterized protein BH09830
total genus	7
structure length	87
sequence length	87
ec nomenclature
pdb deposition date	2007-12-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10276	zf-CHCC	Zinc-finger domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.40	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	q5lls5 like domains	2jz8A00

2JVMA 2JZ8A 2JRRA 2ODXA
chains in the Genus database with same CATH superfamily

1NLTA 1C3GA 3TJ9A 3TJ8A 3AGXA 3AGYA 4J80A 3AKOB 3LZ8A 4L3KA 2ODXA 2B26A 3AGZA 3LA0A 3C6EC 1GMVA 3I38A 3L9ZA 1EARA 2QLDA 2JZ8A 1GMWD 2JRRA 2JVMA 3NY0A 2Q2GA 1GMUA 3TJAA 1GMWA 3NXZA 1XAOA 3C5XC 1EB0A
chains in the Genus database with same CATH topology

2JVMA 2JZ8A 2JRRA 2ODXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JVM A;  2JZ8 A;  2JRR A;  2ODX A; 
#chains in the Genus database with same CATH topology
 1NLT A;  1C3G A;  3TJ9 A;  3TJ8 A;  3AGX A;  3AGY A;  4J80 A;  3AKO B;  3LZ8 A;  4L3K A;  2ODX A;  2B26 A;  3AGZ A;  3LA0 A;  3C6E C;  1GMV A;  3I38 A;  3L9Z A;  1EAR A;  2QLD A;  2JZ8 A;  1GMW D;  2JRR A;  2JVM A;  3NY0 A;  2Q2G A;  1GMU A;  3TJA A;  1GMW A;  3NXZ A;  1XAO A;  3C5X C;  1EB0 A; 
#chains in the Genus database with same CATH homology
 2JVM A;  2JZ8 A;  2JRR A;  2ODX A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2JZ8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations