2ODX | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	54
structure length	54
Chain Sequence	MKDPIIIESYDDYRYVGCTGSPAGSHTIMWLKPTVNEVARCWECGSVYKLNPVG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 54 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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54 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Saccharomyces cerevisiae
publication title	The characterization and role of zinc binding in yeast cox4. pubmed doi rcsb
molecule keywords	Cytochrome c oxidase polypeptide IV
total genus	7
structure length	54
sequence length	54
ec nomenclature	ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date	2006-12-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.40	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	q5lls5 like domains	2odxA00

2JRRA 2JVMA 2JZ8A 2ODXA
chains in the Genus database with same CATH superfamily

3I38A 1EARA 1GMWA 2Q2GA 3NY0A 3TJ8A 1XAOA 3TJAA 4L3KA 1GMWD 3L9ZA 3LA0A 3AGYA 1GMVA 2JVMA 2JRRA 3NXZA 1NLTA 2B26A 3AGZA 3LZ8A 3C6EC 1GMUA 2JZ8A 2ODXA 3AKOB 4J80A 2QLDA 3C5XC 1EB0A 1C3GA 3AGXA 3TJ9A
chains in the Genus database with same CATH topology

2JRRA 2JVMA 2JZ8A 2ODXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JRR A;  2JVM A;  2JZ8 A;  2ODX A; 
#chains in the Genus database with same CATH topology
 3I38 A;  1EAR A;  1GMW A;  2Q2G A;  3NY0 A;  3TJ8 A;  1XAO A;  3TJA A;  4L3K A;  1GMW D;  3L9Z A;  3LA0 A;  3AGY A;  1GMV A;  2JVM A;  2JRR A;  3NXZ A;  1NLT A;  2B26 A;  3AGZ A;  3LZ8 A;  3C6E C;  1GMU A;  2JZ8 A;  2ODX A;  3AKO B;  4J80 A;  2QLD A;  3C5X C;  1EB0 A;  1C3G A;  3AGX A;  3TJ9 A; 
#chains in the Genus database with same CATH homology
 2JRR A;  2JVM A;  2JZ8 A;  2ODX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2ODXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization