2PGS | Genus

Total Genus 134

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	134
sequence length	437
structure length	393
Chain Sequence	SLDWQTLLNRERLPFHKDHDRIIFSGAFRRLGRKTQVHPHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQAAGRGWLDAMSETERNDFLNFEGNAQGFRVLTQLEYHQFDGGTRLTYATLGTYLKYPWTARKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLMEAADDICYALIDLEDGLEMDLLDYAEVESLLLGLVGRRKLAILRGKAIEHLTNAAARAFVEQQDALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMTDSYASEMAREM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Pseudomonas syringae pv. phaseolicola 1448a
publication title	Crystal structure of a putative deoxyguanosinetriphosphate triphosphohydrolase from Pseudomonas syringae pv. phaseolicola 1448A at 2.35 A resolution rcsb
molecule keywords	Putative deoxyguanosinetriphosphate triphosphohydrolase
total genus	134
structure length	393
sequence length	437
ec nomenclature
pdb deposition date	2007-04-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01966	HD	HD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	2pgsA01
1.10.3410.10	Mainly Alpha	Orthogonal Bundle	putative deoxyguanosinetriphosphate triphosphohydrolase fold	putative deoxyguanosinetriphosphate triphosphohydrolase like domain	2pgsA03
1.10.3550.10	Mainly Alpha	Orthogonal Bundle	eoxyguanosinetriphosphate triphosphohydrolase fold	eoxyguanosinetriphosphate triphosphohydrolase domain-like	2pgsA02

4N71A 5AO0A 3TMCA 1U6ZA 2HEKA 1YNBA 4TO6A 3P3QA 1YOYA 2PGSA 5TK7A 4ME4A 2PARA 1XX7A 3MEMA 5AO2A 5TK9A 3CCGA 3BG2A 4QG1A 4BZCA 3IRHA 4MCWA 4TNXA 3MZOA 4QG0A 3M1TA 3LJXA 2DQBA 5TKAA 4XDSA 4MLNA 3TM8A 2PAQA 4X9EA 4TO1A 5AO1A 4MDZA 4TO4A 4QFXA 3NQWA 4RXQA 2OGIA 3U1NA 4RXOA 1VQRA 4BZBA 4QG4A 4L7WA 2O6IA 4R8ZA 3TMDA 5TK6A 4TNRA 2O08A 4QG2A 2GZ4A 3TMBA 4RXRA 3I7AA 4QFZA 4MLMA 4RXSA 4RXPA 4LRLA 3HI0A 4ZWGA 2CQZA 4L1JA 4TNZA 4TO0A 4L7EA 4DMBA 4Q7HA 4TNQA 3KH1A 4N6WA 4TO3A 2Q14A 2PAUA 4TNYA 5AO4A 3NR1A 3RF0A 4TNPA 1VJ7A 4TO5A 4QFYA 5TK8A 5AO3A 2FLOA 4MZ7A 3HC1A 2PQ7A 4TO2A 4ZWEA 4L1JB
chains in the Genus database with same CATH superfamily

4N71A 5AO0A 3TMCA 1U6ZA 2HEKA 4QQWA 1YNBA 4TO6A 3P3QA 1YOYA 4QQXA 2PGSA 5TK7A 4ME4A 2PARA 3S4LA 1XX7A 3MEMA 3KQ5A 5AO2A 5TK9A 3CCGA 3BG2A 4QG1A 4BZCA 3IRHA 4MCWA 4TNXA 3MZOA 4QG0A 3M1TA 3LJXA 2DQBA 5TKAA 4XDSA 4MLNA 3TM8A 2PAQA 4X9EA 4TO1A 5AO1A 4MDZA 4TO4A 4QFXA 3NQWA 4RXQA 2C5UA 4Q2CA 4QQYA 2OGIA 3U1NA 4RXOA 1VQRA 4BZBA 4QG4A 4L7WA 2O6IA 4R8ZA 3TMDA 5TK6A 4TNRA 2O08A 4QG2A 4QQZA 2GZ4A 3TMBA 4RXRA 3I7AA 4QFZA 4MLMA 4RXSA 4RXPA 3SKDA 4LRLA 3HI0A 4ZWGA 2CQZA 3GW7A 4L1JA 4TNZA 4TO0A 4L7EA 4DMBA 4Q2DA 4Q7HA 4TNQA 3KH1A 4N6WA 4TO3A 2Q14A 2PAUA 4TNYA 3SK9A 5AO4A 3NR1A 3RF0A 4TNPA 1VJ7A 4TO5A 4QFYA 5TK8A 5AO3A 2FLOA 4MZ7A 3HC1A 2PQ7A 4TO2A 4ZWEA 4L1JB
chains in the Genus database with same CATH topology

4N71A 5AO0A 3TMCA 1U6ZA 2HEKA 4QQWA 1YNBA 4TO6A 3P3QA 1YOYA 4QQXA 2PGSA 5TK7A 4ME4A 2PARA 3S4LA 1XX7A 3MEMA 3KQ5A 5AO2A 5TK9A 3CCGA 3BG2A 4QG1A 4BZCA 3IRHA 4MCWA 4TNXA 3MZOA 4QG0A 3M1TA 3LJXA 2DQBA 5TKAA 4XDSA 4MLNA 3TM8A 2PAQA 4X9EA 4TO1A 5AO1A 4MDZA 4TO4A 4QFXA 3NQWA 4RXQA 4Q2CA 4QQYA 2OGIA 3U1NA 4RXOA 1VQRA 4BZBA 4QG4A 4L7WA 2O6IA 4R8ZA 3TMDA 5TK6A 4TNRA 2O08A 4QG2A 4QQZA 2GZ4A 3TMBA 4RXRA 3I7AA 4QFZA 4MLMA 4RXSA 4RXPA 3SKDA 4LRLA 3HI0A 4ZWGA 2CQZA 3GW7A 4L1JA 4TNZA 4TO0A 4L7EA 4DMBA 4Q2DA 4Q7HA 4TNQA 3KH1A 4N6WA 4TO3A 2Q14A 2PAUA 4TNYA 3SK9A 5AO4A 3NR1A 3RF0A 4TNPA 1VJ7A 4TO5A 4QFYA 5TK8A 5AO3A 2FLOA 4MZ7A 3HC1A 2PQ7A 4TO2A 4ZWEA 4L1JB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4N71 A;  5AO0 A;  3TMC A;  1U6Z A;  2HEK A;  1YNB A;  4TO6 A;  3P3Q A;  1YOY A;  2PGS A;  5TK7 A;  4ME4 A;  2PAR A;  1XX7 A;  3MEM A;  5AO2 A;  5TK9 A;  3CCG A;  3BG2 A;  4QG1 A;  4BZC A;  3IRH A;  4MCW A;  4TNX A;  3MZO A;  4QG0 A;  3M1T A;  3LJX A;  2DQB A;  5TKA A;  4XDS A;  4MLN A;  3TM8 A;  2PAQ A;  4X9E A;  4TO1 A;  5AO1 A;  4MDZ A;  4TO4 A;  4QFX A;  3NQW A;  4RXQ A;  2OGI A;  3U1N A;  4RXO A;  1VQR A;  4BZB A;  4QG4 A;  4L7W A;  2O6I A;  4R8Z A;  3TMD A;  5TK6 A;  4TNR A;  2O08 A;  4QG2 A;  2GZ4 A;  3TMB A;  4RXR A;  3I7A A;  4QFZ A;  4MLM A;  4RXS A;  4RXP A;  4LRL A;  3HI0 A;  4ZWG A;  2CQZ A;  4L1J A;  4TNZ A;  4TO0 A;  4L7E A;  4DMB A;  4Q7H A;  4TNQ A;  3KH1 A;  4N6W A;  4TO3 A;  2Q14 A;  2PAU A;  4TNY A;  5AO4 A;  3NR1 A;  3RF0 A;  4TNP A;  1VJ7 A;  4TO5 A;  4QFY A;  5TK8 A;  5AO3 A;  2FLO A;  4MZ7 A;  3HC1 A;  2PQ7 A;  4TO2 A;  4ZWE A;  4L1J B; 
#chains in the Genus database with same CATH topology
 4N71 A;  5AO0 A;  3TMC A;  1U6Z A;  2HEK A;  4QQW A;  1YNB A;  4TO6 A;  3P3Q A;  1YOY A;  4QQX A;  2PGS A;  5TK7 A;  4ME4 A;  2PAR A;  3S4L A;  1XX7 A;  3MEM A;  3KQ5 A;  5AO2 A;  5TK9 A;  3CCG A;  3BG2 A;  4QG1 A;  4BZC A;  3IRH A;  4MCW A;  4TNX A;  3MZO A;  4QG0 A;  3M1T A;  3LJX A;  2DQB A;  5TKA A;  4XDS A;  4MLN A;  3TM8 A;  2PAQ A;  4X9E A;  4TO1 A;  5AO1 A;  4MDZ A;  4TO4 A;  4QFX A;  3NQW A;  4RXQ A;  2C5U A;  4Q2C A;  4QQY A;  2OGI A;  3U1N A;  4RXO A;  1VQR A;  4BZB A;  4QG4 A;  4L7W A;  2O6I A;  4R8Z A;  3TMD A;  5TK6 A;  4TNR A;  2O08 A;  4QG2 A;  4QQZ A;  2GZ4 A;  3TMB A;  4RXR A;  3I7A A;  4QFZ A;  4MLM A;  4RXS A;  4RXP A;  3SKD A;  4LRL A;  3HI0 A;  4ZWG A;  2CQZ A;  3GW7 A;  4L1J A;  4TNZ A;  4TO0 A;  4L7E A;  4DMB A;  4Q2D A;  4Q7H A;  4TNQ A;  3KH1 A;  4N6W A;  4TO3 A;  2Q14 A;  2PAU A;  4TNY A;  3SK9 A;  5AO4 A;  3NR1 A;  3RF0 A;  4TNP A;  1VJ7 A;  4TO5 A;  4QFY A;  5TK8 A;  5AO3 A;  2FLO A;  4MZ7 A;  3HC1 A;  2PQ7 A;  4TO2 A;  4ZWE A;  4L1J B; 
#chains in the Genus database with same CATH homology
 4N71 A;  5AO0 A;  3TMC A;  1U6Z A;  2HEK A;  4QQW A;  1YNB A;  4TO6 A;  3P3Q A;  1YOY A;  4QQX A;  2PGS A;  5TK7 A;  4ME4 A;  2PAR A;  3S4L A;  1XX7 A;  3MEM A;  3KQ5 A;  5AO2 A;  5TK9 A;  3CCG A;  3BG2 A;  4QG1 A;  4BZC A;  3IRH A;  4MCW A;  4TNX A;  3MZO A;  4QG0 A;  3M1T A;  3LJX A;  2DQB A;  5TKA A;  4XDS A;  4MLN A;  3TM8 A;  2PAQ A;  4X9E A;  4TO1 A;  5AO1 A;  4MDZ A;  4TO4 A;  4QFX A;  3NQW A;  4RXQ A;  4Q2C A;  4QQY A;  2OGI A;  3U1N A;  4RXO A;  1VQR A;  4BZB A;  4QG4 A;  4L7W A;  2O6I A;  4R8Z A;  3TMD A;  5TK6 A;  4TNR A;  2O08 A;  4QG2 A;  4QQZ A;  2GZ4 A;  3TMB A;  4RXR A;  3I7A A;  4QFZ A;  4MLM A;  4RXS A;  4RXP A;  3SKD A;  4LRL A;  3HI0 A;  4ZWG A;  2CQZ A;  3GW7 A;  4L1J A;  4TNZ A;  4TO0 A;  4L7E A;  4DMB A;  4Q2D A;  4Q7H A;  4TNQ A;  3KH1 A;  4N6W A;  4TO3 A;  2Q14 A;  2PAU A;  4TNY A;  3SK9 A;  5AO4 A;  3NR1 A;  3RF0 A;  4TNP A;  1VJ7 A;  4TO5 A;  4QFY A;  5TK8 A;  5AO3 A;  2FLO A;  4MZ7 A;  3HC1 A;  2PQ7 A;  4TO2 A;  4ZWE A;  4L1J B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PGSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations