2Q2G | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	176
structure length	176
Chain Sequence	RSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 176 atoms

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176 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Cryptosporidium parvum iowa ii
publication title	Crystal structure of dimerization domain of HSP40 from Cryptosporidium parvum, cgd2_1800. rcsb
molecule keywords	Heat shock 40 kDa protein, putative (fragment)
total genus	38
structure length	176
sequence length	176
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	2q2gA02
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	2q2gA01

1GMWA 1NLTA 2Q2GA 3AGZA 2B26A 3NY0A 4L3KA 1XAOA 3AGYA 4J80A 3L9ZA 1EB0A 1EARA 2QLDA 1GMWD 3LA0A 1GMVA 3AGXA 3NXZA 1GMUA 3TJAA 3TJ9A 1C3GA 3LZ8A 3I38A 3TJ8A
chains in the Genus database with same CATH superfamily

1GMWA 1NLTA 2Q2GA 3C6EC 3AGZA 2B26A 3NY0A 4L3KA 1XAOA 3AGYA 4J80A 3L9ZA 2ODXA 3TJ8A 1EB0A 1EARA 2QLDA 2JZ8A 1GMWD 3C5XC 3LA0A 1GMVA 3AGXA 3NXZA 1GMUA 3TJAA 3TJ9A 1C3GA 3LZ8A 2JRRA 3I38A 2JVMA 3AKOB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GMW A;  1NLT A;  2Q2G A;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  1EB0 A;  1EAR A;  2QLD A;  1GMW D;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  3I38 A;  3TJ8 A; 
#chains in the Genus database with same CATH topology
 1GMW A;  1NLT A;  2Q2G A;  3C6E C;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  2ODX A;  3TJ8 A;  1EB0 A;  1EAR A;  2QLD A;  2JZ8 A;  1GMW D;  3C5X C;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  2JRR A;  3I38 A;  2JVM A;  3AKO B; 
#chains in the Genus database with same CATH homology
 1GMW A;  1NLT A;  2Q2G A;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  1EB0 A;  1EAR A;  2QLD A;  1GMW D;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  3I38 A;  3TJ8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Q2GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations