3AGX | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	176
structure length	176
Chain Sequence	THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 176 atoms

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176 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Homo sapiens
publication title	Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70 pubmed doi rcsb
molecule keywords	DnaJ homolog subfamily B member 1
total genus	40
structure length	176
sequence length	176
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3agxA01
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3agxA02

2QLDA 3AGZA 2B26A 4L3KA 3AGYA 3TJ9A 1EB0A 1GMWD 1NLTA 4J80A 3LZ8A 1XAOA 3TJ8A 1EARA 3LA0A 3AGXA 1GMVA 3NXZA 1GMWA 3I38A 1GMUA 1C3GA 3NY0A 2Q2GA 3TJAA 3L9ZA
chains in the Genus database with same CATH superfamily

2QLDA 3AGZA 2B26A 4L3KA 3AGYA 3TJ9A 1EB0A 1GMWD 1NLTA 2JRRA 4J80A 3C5XC 3LZ8A 1XAOA 2JVMA 3C6EC 3TJ8A 1EARA 3LA0A 3AGXA 1GMVA 3AKOB 3NXZA 1GMWA 3I38A 1GMUA 2JZ8A 1C3GA 3NY0A 2Q2GA 3TJAA 2ODXA 3L9ZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2QLD A;  3AGZ A;  2B26 A;  4L3K A;  3AGY A;  3TJ9 A;  1EB0 A;  1GMW D;  1NLT A;  4J80 A;  3LZ8 A;  1XAO A;  3TJ8 A;  1EAR A;  3LA0 A;  3AGX A;  1GMV A;  3NXZ A;  1GMW A;  3I38 A;  1GMU A;  1C3G A;  3NY0 A;  2Q2G A;  3TJA A;  3L9Z A; 
#chains in the Genus database with same CATH topology
 2QLD A;  3AGZ A;  2B26 A;  4L3K A;  3AGY A;  3TJ9 A;  1EB0 A;  1GMW D;  1NLT A;  2JRR A;  4J80 A;  3C5X C;  3LZ8 A;  1XAO A;  2JVM A;  3C6E C;  3TJ8 A;  1EAR A;  3LA0 A;  3AGX A;  1GMV A;  3AKO B;  3NXZ A;  1GMW A;  3I38 A;  1GMU A;  2JZ8 A;  1C3G A;  3NY0 A;  2Q2G A;  3TJA A;  2ODX A;  3L9Z A; 
#chains in the Genus database with same CATH homology
 2QLD A;  3AGZ A;  2B26 A;  4L3K A;  3AGY A;  3TJ9 A;  1EB0 A;  1GMW D;  1NLT A;  4J80 A;  3LZ8 A;  1XAO A;  3TJ8 A;  1EAR A;  3LA0 A;  3AGX A;  1GMV A;  3NXZ A;  1GMW A;  3I38 A;  1GMU A;  1C3G A;  3NY0 A;  2Q2G A;  3TJA A;  3L9Z A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AGXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations