3AGZ | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	185
structure length	185
Chain Sequence	ARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 185 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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185 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Homo sapiens
publication title	Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70 pubmed doi rcsb
molecule keywords	DnaJ homolog subfamily B member 1
total genus	39
structure length	185
sequence length	185
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3agzA01
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3agzA02

3AGXA 3NXZA 3I38A 2QLDA 3L9ZA 4J80A 3TJ8A 3TJ9A 2B26A 1GMUA 1NLTA 3AGYA 1C3GA 2Q2GA 3NY0A 1GMWD 4L3KA 1XAOA 1EARA 1GMVA 3LZ8A 3AGZA 3LA0A 3TJAA 1GMWA 1EB0A
chains in the Genus database with same CATH superfamily

3AGXA 3NXZA 2JVMA 3C5XC 2QLDA 3I38A 3L9ZA 2ODXA 4J80A 3C6EC 2JZ8A 3AKOB 3TJ8A 3TJ9A 2B26A 1GMUA 1NLTA 2Q2GA 3AGYA 1C3GA 3NY0A 1GMWD 4L3KA 1XAOA 1EARA 1GMVA 2JRRA 3LZ8A 3AGZA 3LA0A 3TJAA 1GMWA 1EB0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AGX A;  3NXZ A;  3I38 A;  2QLD A;  3L9Z A;  4J80 A;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  3AGY A;  1C3G A;  2Q2G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A; 
#chains in the Genus database with same CATH topology
 3AGX A;  3NXZ A;  2JVM A;  3C5X C;  2QLD A;  3I38 A;  3L9Z A;  2ODX A;  4J80 A;  3C6E C;  2JZ8 A;  3AKO B;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  2Q2G A;  3AGY A;  1C3G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  2JRR A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A; 
#chains in the Genus database with same CATH homology
 3AGX A;  3NXZ A;  3I38 A;  2QLD A;  3L9Z A;  4J80 A;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  3AGY A;  1C3G A;  2Q2G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AGZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations