3BUK | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	159
structure length	159
Chain Sequence	TCSTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDSVTFSDVVSATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEANHVDPCLPCTVCEDTERQLRECTPWADAECE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 159 atoms

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159 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of the neurotrophin-3 and p75NTR symmetrical complex. pubmed doi rcsb
molecule keywords	Neurotrophin-3
molecule tags	Signaling protein
source organism	Homo sapiens
total genus	23
structure length	159
sequence length	159
chains with identical sequence	D
ec nomenclature
pdb deposition date	2008-01-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3bukC02
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3bukC01

1DU3A 1ZA3R 4MXWR 3IJ2X 4YN0A 3URFZ 3U3VA 3QBQB 3U3TA 4E4DR 5BNQR 3U3SA 3MI8D 4GIQR 4BK5A 1D0GR 2UWIA 1FT4A 4OD2S 2HEYR 3FL7A 2X10A 3U3QA 3BUKC 4RSUD 1D4VA 3MHDD 4MSVB 3U3PA 3WVTA 3MBWA 4J6GC 3ALQR 3ME4A 1NCFA 1JMAB 3QO4A 4BK4A 3QD6R 5CIRE 3THMF 3TJEF 4KGGC 4M4RA 4M4PA 5DMJA 5L36B 3K51B 3X3FA 3ME2R 2HEVR 4FHQA 4N90R 1EXTA 2AW2B 1TNRR 4I9XC 1SG1X 5IHLA 4KGQC 2H9GR
chains in the Genus database with same CATH superfamily

1DU3A 1ZA3R 2E4VA 4MXWR 3IJ2X 4YN0A 3URFZ 3U3VA 3QBQB 3U3TA 4E4DR 2E4XA 5BNQR 3U3SA 3MI8D 4GIQR 4BK5A 1D0GR 2UWIA 1FT4A 4OD2S 2HEYR 3FL7A 2X10A 3U3QA 3BUKC 4RSUD 1D4VA 3MHDD 4MSVB 3U3PA 3WVTA 2E4UA 3MBWA 4J6GC 3ALQR 3ME4A 1NCFA 1JMAB 3QO4A 4BK4A 3QD6R 5CIRE 3THMF 3TJEF 4KGGC 4M4RA 4M4PA 2E4YA 5DMJA 2QR6A 5L36B 3K51B 3X3FA 3ME2R 2HEVR 4FHQA 4N90R 1EXTA 2AW2B 1TNRR 4I9XC 2E4WA 1SG1X 5IHLA 4KGQC 2H9GR
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1DU3 A;  1ZA3 R;  4MXW R;  3IJ2 X;  4YN0 A;  3URF Z;  3U3V A;  3QBQ B;  3U3T A;  4E4D R;  5BNQ R;  3U3S A;  3MI8 D;  4GIQ R;  4BK5 A;  1D0G R;  2UWI A;  1FT4 A;  4OD2 S;  2HEY R;  3FL7 A;  2X10 A;  3U3Q A;  3BUK C;  4RSU D;  1D4V A;  3MHD D;  4MSV B;  3U3P A;  3WVT A;  3MBW A;  4J6G C;  3ALQ R;  3ME4 A;  1NCF A;  1JMA B;  3QO4 A;  4BK4 A;  3QD6 R;  5CIR E;  3THM F;  3TJE F;  4KGG C;  4M4R A;  4M4P A;  5DMJ A;  5L36 B;  3K51 B;  3X3F A;  3ME2 R;  2HEV R;  4FHQ A;  4N90 R;  1EXT A;  2AW2 B;  1TNR R;  4I9X C;  1SG1 X;  5IHL A;  4KGQ C;  2H9G R; 
#chains in the Genus database with same CATH topology
 1DU3 A;  1ZA3 R;  2E4V A;  4MXW R;  3IJ2 X;  4YN0 A;  3URF Z;  3U3V A;  3QBQ B;  3U3T A;  4E4D R;  2E4X A;  5BNQ R;  3U3S A;  3MI8 D;  4GIQ R;  4BK5 A;  1D0G R;  2UWI A;  1FT4 A;  4OD2 S;  2HEY R;  3FL7 A;  2X10 A;  3U3Q A;  3BUK C;  4RSU D;  1D4V A;  3MHD D;  4MSV B;  3U3P A;  3WVT A;  2E4U A;  3MBW A;  4J6G C;  3ALQ R;  3ME4 A;  1NCF A;  1JMA B;  3QO4 A;  4BK4 A;  3QD6 R;  5CIR E;  3THM F;  3TJE F;  4KGG C;  4M4R A;  4M4P A;  2E4Y A;  5DMJ A;  2QR6 A;  5L36 B;  3K51 B;  3X3F A;  3ME2 R;  2HEV R;  4FHQ A;  4N90 R;  1EXT A;  2AW2 B;  1TNR R;  4I9X C;  2E4W A;  1SG1 X;  5IHL A;  4KGQ C;  2H9G R; 
#chains in the Genus database with same CATH homology
 1DU3 A;  1ZA3 R;  4MXW R;  3IJ2 X;  4YN0 A;  3URF Z;  3U3V A;  3QBQ B;  3U3T A;  4E4D R;  5BNQ R;  3U3S A;  3MI8 D;  4GIQ R;  4BK5 A;  1D0G R;  2UWI A;  1FT4 A;  4OD2 S;  2HEY R;  3FL7 A;  2X10 A;  3U3Q A;  3BUK C;  4RSU D;  1D4V A;  3MHD D;  4MSV B;  3U3P A;  3WVT A;  3MBW A;  4J6G C;  3ALQ R;  3ME4 A;  1NCF A;  1JMA B;  3QO4 A;  4BK4 A;  3QD6 R;  5CIR E;  3THM F;  3TJE F;  4KGG C;  4M4R A;  4M4P A;  5DMJ A;  5L36 B;  3K51 B;  3X3F A;  3ME2 R;  2HEV R;  4FHQ A;  4N90 R;  1EXT A;  2AW2 B;  1TNR R;  4I9X C;  1SG1 X;  5IHL A;  4KGQ C;  2H9G R;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BUKC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations