3C5X | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	81
structure length	81
Chain Sequence	FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Dengue virus 2 thailand/16681/84
publication title	The flavivirus precursor membrane-envelope protein complex: structure and maturation. pubmed doi rcsb
molecule keywords	Envelope protein E
total genus	13
structure length	81
sequence length	81
ec nomenclature
pdb deposition date	2008-02-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01570	Flavi_propep	Flavivirus polyprotein propeptide

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.50	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	HSP40/DNAj peptide-binding domain	3c5xC00

3C6EC 3C5XC
chains in the Genus database with same CATH superfamily

1GMWA 3LA0A 2Q2GA 4J80A 4L3KA 2B26A 1NLTA 1EARA 2ODXA 2QLDA 3C6EC 3AGYA 1XAOA 1GMWD 3L9ZA 3AKOB 2JVMA 2JZ8A 3LZ8A 1GMVA 3TJAA 1GMUA 1C3GA 3C5XC 3I38A 3AGZA 3TJ9A 2JRRA 3AGXA 1EB0A 3TJ8A 3NY0A 3NXZA
chains in the Genus database with same CATH topology

3AKOB 3C6EC 3C5XC
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3C6E C;  3C5X C; 
#chains in the Genus database with same CATH topology
 1GMW A;  3LA0 A;  2Q2G A;  4J80 A;  4L3K A;  2B26 A;  1NLT A;  1EAR A;  2ODX A;  2QLD A;  3C6E C;  3AGY A;  1XAO A;  1GMW D;  3L9Z A;  3AKO B;  2JVM A;  2JZ8 A;  3LZ8 A;  1GMV A;  3TJA A;  1GMU A;  1C3G A;  3C5X C;  3I38 A;  3AGZ A;  3TJ9 A;  2JRR A;  3AGX A;  1EB0 A;  3TJ8 A;  3NY0 A;  3NXZ A; 
#chains in the Genus database with same CATH homology
 3AKO B;  3C6E C;  3C5X C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3C5XC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations