3I38 | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	103
structure length	103
Chain Sequence	HPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKTW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 103 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

103 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:102});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Chaperone
source organism	Klebsiella pneumoniae subsp. pneumoniae mgh 78578
publication title	Structure of a Putative Chaperone Protein Dnaj from Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 rcsb
molecule keywords	Putative chaperone DnaJ
total genus	21
structure length	103
sequence length	103
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date	2009-06-30

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3i38A01

3AGXA 3NXZA 3I38A 2QLDA 3L9ZA 4J80A 3TJ8A 3TJ9A 2B26A 1GMUA 1NLTA 3AGYA 1C3GA 2Q2GA 3NY0A 1GMWD 4L3KA 1XAOA 1EARA 1GMVA 3LZ8A 3AGZA 3LA0A 3TJAA 1GMWA 1EB0A
chains in the Genus database with same CATH superfamily

3AGXA 3NXZA 2JVMA 3C5XC 2QLDA 3I38A 3L9ZA 2ODXA 4J80A 3C6EC 2JZ8A 3AKOB 3TJ8A 3TJ9A 2B26A 1GMUA 1NLTA 2Q2GA 3AGYA 1C3GA 3NY0A 1GMWD 4L3KA 1XAOA 1EARA 1GMVA 2JRRA 3LZ8A 3AGZA 3LA0A 3TJAA 1GMWA 1EB0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AGX A;  3NXZ A;  3I38 A;  2QLD A;  3L9Z A;  4J80 A;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  3AGY A;  1C3G A;  2Q2G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A; 
#chains in the Genus database with same CATH topology
 3AGX A;  3NXZ A;  2JVM A;  3C5X C;  2QLD A;  3I38 A;  3L9Z A;  2ODX A;  4J80 A;  3C6E C;  2JZ8 A;  3AKO B;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  2Q2G A;  3AGY A;  1C3G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  2JRR A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A; 
#chains in the Genus database with same CATH homology
 3AGX A;  3NXZ A;  3I38 A;  2QLD A;  3L9Z A;  4J80 A;  3TJ8 A;  3TJ9 A;  2B26 A;  1GMU A;  1NLT A;  3AGY A;  1C3G A;  2Q2G A;  3NY0 A;  1GMW D;  4L3K A;  1XAO A;  1EAR A;  1GMV A;  3LZ8 A;  3AGZ A;  3LA0 A;  3TJA A;  1GMW A;  1EB0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3I38A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization