3LZ8 | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	190
structure length	186
Chain Sequence	AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKTW

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Klebsiella pneumoniae subsp. pneumoniae
publication title	Structure of a Putative Chaperone Dnaj from Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 2.9 A Resolution. rcsb
molecule keywords	Putative chaperone DnaJ
total genus	37
structure length	186
sequence length	190
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-03-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00226	DnaJ	DnaJ domain
A	PF01556	DnaJ_C	DnaJ C terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3lz8A01
2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	3lz8A02

1GMWA 1NLTA 2Q2GA 3AGZA 2B26A 3NY0A 4L3KA 1XAOA 3AGYA 4J80A 3L9ZA 1EB0A 1EARA 2QLDA 1GMWD 3LA0A 1GMVA 3AGXA 3NXZA 1GMUA 3TJAA 3TJ9A 1C3GA 3LZ8A 3I38A 3TJ8A
chains in the Genus database with same CATH superfamily

1GMWA 1NLTA 2Q2GA 3C6EC 3AGZA 2B26A 3NY0A 4L3KA 1XAOA 3AGYA 4J80A 3L9ZA 2ODXA 3TJ8A 1EB0A 1EARA 2QLDA 2JZ8A 1GMWD 3C5XC 3LA0A 1GMVA 3AGXA 3NXZA 1GMUA 3TJAA 3TJ9A 1C3GA 3LZ8A 2JRRA 3I38A 2JVMA 3AKOB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GMW A;  1NLT A;  2Q2G A;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  1EB0 A;  1EAR A;  2QLD A;  1GMW D;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  3I38 A;  3TJ8 A; 
#chains in the Genus database with same CATH topology
 1GMW A;  1NLT A;  2Q2G A;  3C6E C;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  2ODX A;  3TJ8 A;  1EB0 A;  1EAR A;  2QLD A;  2JZ8 A;  1GMW D;  3C5X C;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  2JRR A;  3I38 A;  2JVM A;  3AKO B; 
#chains in the Genus database with same CATH homology
 1GMW A;  1NLT A;  2Q2G A;  3AGZ A;  2B26 A;  3NY0 A;  4L3K A;  1XAO A;  3AGY A;  4J80 A;  3L9Z A;  1EB0 A;  1EAR A;  2QLD A;  1GMW D;  3LA0 A;  1GMV A;  3AGX A;  3NXZ A;  1GMU A;  3TJA A;  3TJ9 A;  1C3G A;  3LZ8 A;  3I38 A;  3TJ8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LZ8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations