The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
29
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
CTQERHYEHLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKPWTNCTLLGKLEAHQGTTESDVVCSSS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure-based development of a receptor activator of nuclear factor-kappaB ligand (RANKL) inhibitor peptide and molecular basis for osteopetrosis
pubmed doi rcsb |
| molecule keywords |
Tumor necrosis factor ligand superfamily member 11
|
| molecule tags |
Cytokine/cytokine receptor
|
| source organism |
Mus musculus
|
| total genus |
29
|
| structure length |
164
|
| sequence length |
164
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2011-01-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00020 | TNFR_c6 | TNFR/NGFR cysteine-rich region |
| B | PF18278 | RANK_CRD_2 | Receptor activator of the NF-KB cysteine-rich repeat domain 2 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A; domain 2 | Tumor Necrosis Factor Receptor, subunit A, domain 2 | ||
| Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A; domain 2 | Tumor Necrosis Factor Receptor, subunit A, domain 2 |
#chains in the Genus database with same CATH superfamily 1D4V A; 5L36 B; 1DU3 A; 1ZA3 R; 3ALQ R; 4M4P A; 4E4D R; 4RSU D; 3TJE F; 4BK5 A; 2UWI A; 3BUK C; 4GIQ R; 4KGG C; 3QO4 A; 4BK4 A; 3ME4 A; 4MSV B; 5BNQ R; 3K51 B; 4FHQ A; 2HEV R; 5CIR E; 4YN0 A; 3U3V A; 2AW2 B; 1SG1 X; 1EXT A; 5IHL A; 1FT4 A; 3ME2 R; 3MI8 D; 3U3P A; 1JMA B; 3FL7 A; 4J6G C; 4KGQ C; 4M4R A; 4N90 R; 3THM F; 3URF Z; 3WVT A; 3X3F A; 2X10 A; 3U3Q A; 1NCF A; 1D0G R; 3QD6 R; 3IJ2 X; 3MBW A; 2H9G R; 3U3T A; 5DMJ A; 3U3S A; 4MXW R; 3QBQ B; 4I9X C; 3MHD D; 4OD2 S; 2HEY R; 1TNR R; #chains in the Genus database with same CATH topology 1D4V A; 2E4U A; 5L36 B; 1DU3 A; 1ZA3 R; 3ALQ R; 4M4P A; 4E4D R; 4RSU D; 3TJE F; 4BK5 A; 2UWI A; 2E4W A; 3BUK C; 4GIQ R; 4KGG C; 3QO4 A; 4BK4 A; 3ME4 A; 4MSV B; 5BNQ R; 3K51 B; 4FHQ A; 2E4X A; 2HEV R; 5CIR E; 4YN0 A; 3U3V A; 2AW2 B; 1SG1 X; 2QR6 A; 1EXT A; 5IHL A; 1FT4 A; 2E4Y A; 3ME2 R; 3MI8 D; 3U3P A; 1JMA B; 3FL7 A; 4J6G C; 4KGQ C; 4M4R A; 4N90 R; 3THM F; 3URF Z; 3WVT A; 3X3F A; 2E4V A; 2X10 A; 3U3Q A; 1NCF A; 1D0G R; 3QD6 R; 3IJ2 X; 3MBW A; 2H9G R; 3U3T A; 5DMJ A; 3U3S A; 4MXW R; 3QBQ B; 4I9X C; 3MHD D; 4OD2 S; 2HEY R; 1TNR R; #chains in the Genus database with same CATH homology 1D4V A; 5L36 B; 1DU3 A; 1ZA3 R; 3ALQ R; 4M4P A; 4E4D R; 4RSU D; 3TJE F; 4BK5 A; 2UWI A; 3BUK C; 4GIQ R; 4KGG C; 3QO4 A; 4BK4 A; 3ME4 A; 4MSV B; 5BNQ R; 3K51 B; 4FHQ A; 2HEV R; 5CIR E; 4YN0 A; 3U3V A; 2AW2 B; 1SG1 X; 1EXT A; 5IHL A; 1FT4 A; 3ME2 R; 3MI8 D; 3U3P A; 1JMA B; 3FL7 A; 4J6G C; 4KGQ C; 4M4R A; 4N90 R; 3THM F; 3URF Z; 3WVT A; 3X3F A; 2X10 A; 3U3Q A; 1NCF A; 1D0G R; 3QD6 R; 3IJ2 X; 3MBW A; 2H9G R; 3U3T A; 5DMJ A; 3U3S A; 4MXW R; 3QBQ B; 4I9X C; 3MHD D; 4OD2 S; 2HEY R; 1TNR R;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
