3U3V | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	164
structure length	164
Chain Sequence	IGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Apoptosis
source organism	Homo sapiens
publication title	S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS pubmed doi rcsb
molecule keywords	Tumor necrosis factor receptor superfamily member 21
total genus	24
structure length	164
sequence length	164
ec nomenclature
pdb deposition date	2011-10-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3u3vA02
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3u3vA01

3ME2R 3K51B 1SG1X 3MBWA 2H9GR 2X10A 4MSVB 3U3SA 3ALQR 3BUKC 3MHDD 4BK5A 3QO4A 1DU3A 3IJ2X 4FHQA 4RSUD 4N90R 1EXTA 3TJEF 4I9XC 5IHLA 3WVTA 1JMAB 1FT4A 2UWIA 3QBQB 1ZA3R 3THMF 3URFZ 3MI8D 1NCFA 3X3FA 3U3PA 3U3TA 5L36B 4OD2S 5CIRE 4M4RA 4YN0A 5DMJA 3FL7A 4MXWR 3U3VA 2AW2B 4BK4A 1D4VA 4E4DR 3QD6R 4J6GC 2HEYR 3U3QA 1TNRR 4GIQR 2HEVR 4KGGC 4KGQC 5BNQR 1D0GR 4M4PA 3ME4A
chains in the Genus database with same CATH superfamily

3ME2R 3K51B 1SG1X 3MBWA 2H9GR 2X10A 4MSVB 3U3SA 3ALQR 3BUKC 3MHDD 4BK5A 2E4WA 1DU3A 3IJ2X 3QO4A 4FHQA 4N90R 1EXTA 2E4VA 4RSUD 4I9XC 3TJEF 5IHLA 3WVTA 1JMAB 1FT4A 2UWIA 3QBQB 1ZA3R 3THMF 2E4XA 3MI8D 1NCFA 3URFZ 3X3FA 3U3PA 3U3TA 5L36B 4OD2S 2E4YA 4M4RA 5CIRE 4YN0A 5DMJA 3FL7A 4MXWR 2E4UA 3U3VA 2AW2B 4BK4A 1D4VA 2QR6A 4E4DR 3QD6R 4J6GC 2HEYR 3U3QA 1TNRR 4GIQR 2HEVR 4KGGC 4KGQC 5BNQR 1D0GR 4M4PA 3ME4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ME2 R;  3K51 B;  1SG1 X;  3MBW A;  2H9G R;  2X10 A;  4MSV B;  3U3S A;  3ALQ R;  3BUK C;  3MHD D;  4BK5 A;  3QO4 A;  1DU3 A;  3IJ2 X;  4FHQ A;  4RSU D;  4N90 R;  1EXT A;  3TJE F;  4I9X C;  5IHL A;  3WVT A;  1JMA B;  1FT4 A;  2UWI A;  3QBQ B;  1ZA3 R;  3THM F;  3URF Z;  3MI8 D;  1NCF A;  3X3F A;  3U3P A;  3U3T A;  5L36 B;  4OD2 S;  5CIR E;  4M4R A;  4YN0 A;  5DMJ A;  3FL7 A;  4MXW R;  3U3V A;  2AW2 B;  4BK4 A;  1D4V A;  4E4D R;  3QD6 R;  4J6G C;  2HEY R;  3U3Q A;  1TNR R;  4GIQ R;  2HEV R;  4KGG C;  4KGQ C;  5BNQ R;  1D0G R;  4M4P A;  3ME4 A; 
#chains in the Genus database with same CATH topology
 3ME2 R;  3K51 B;  1SG1 X;  3MBW A;  2H9G R;  2X10 A;  4MSV B;  3U3S A;  3ALQ R;  3BUK C;  3MHD D;  4BK5 A;  2E4W A;  1DU3 A;  3IJ2 X;  3QO4 A;  4FHQ A;  4N90 R;  1EXT A;  2E4V A;  4RSU D;  4I9X C;  3TJE F;  5IHL A;  3WVT A;  1JMA B;  1FT4 A;  2UWI A;  3QBQ B;  1ZA3 R;  3THM F;  2E4X A;  3MI8 D;  1NCF A;  3URF Z;  3X3F A;  3U3P A;  3U3T A;  5L36 B;  4OD2 S;  2E4Y A;  4M4R A;  5CIR E;  4YN0 A;  5DMJ A;  3FL7 A;  4MXW R;  2E4U A;  3U3V A;  2AW2 B;  4BK4 A;  1D4V A;  2QR6 A;  4E4D R;  3QD6 R;  4J6G C;  2HEY R;  3U3Q A;  1TNR R;  4GIQ R;  2HEV R;  4KGG C;  4KGQ C;  5BNQ R;  1D0G R;  4M4P A;  3ME4 A; 
#chains in the Genus database with same CATH homology
 3ME2 R;  3K51 B;  1SG1 X;  3MBW A;  2H9G R;  2X10 A;  4MSV B;  3U3S A;  3ALQ R;  3BUK C;  3MHD D;  4BK5 A;  3QO4 A;  1DU3 A;  3IJ2 X;  4FHQ A;  4RSU D;  4N90 R;  1EXT A;  3TJE F;  4I9X C;  5IHL A;  3WVT A;  1JMA B;  1FT4 A;  2UWI A;  3QBQ B;  1ZA3 R;  3THM F;  3URF Z;  3MI8 D;  1NCF A;  3X3F A;  3U3P A;  3U3T A;  5L36 B;  4OD2 S;  5CIR E;  4M4R A;  4YN0 A;  5DMJ A;  3FL7 A;  4MXW R;  3U3V A;  2AW2 B;  4BK4 A;  1D4V A;  4E4D R;  3QD6 R;  4J6G C;  2HEY R;  3U3Q A;  1TNR R;  4GIQ R;  2HEV R;  4KGG C;  4KGQ C;  5BNQ R;  1D0G R;  4M4P A;  3ME4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3U3VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations