3WVT | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	102
structure length	102
Chain Sequence	PQCKEEEYPVGTECCPKCSPGYRVKQACGELTGTVCVPCAPRTFSAHLNGLSKCLPCRPCDPAMGLVIRRDCSSTENTECGCDQGHFCVSEKGDDCVECQPH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 102 atoms

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102 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural insight into equine lentivirus receptor 1 pubmed doi rcsb
molecule keywords	ELR1
molecule tags	Protein binding
source organism	Equus caballus
total genus	22
structure length	102
sequence length	102
ec nomenclature
pdb deposition date	2014-06-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3wvtA01
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3wvtA02

4MXWR 4BK5A 1ZA3R 4OD2S 4I9XC 3ALQR 3U3QA 5L36B 3TJEF 4BK4A 3BUKC 4YN0A 3MHDD 1NCFA 4J6GC 3ME2R 3MBWA 1EXTA 3U3VA 1JMAB 3U3TA 3X3FA 3U3SA 4FHQA 1SG1X 2H9GR 4GIQR 3WVTA 2HEYR 2AW2B 4M4RA 5BNQR 3THMF 5IHLA 3QBQB 3MI8D 3U3PA 4N90R 4KGQC 2X10A 3IJ2X 4KGGC 3K51B 3QD6R 5DMJA 5CIRE 4E4DR 3FL7A 2HEVR 1D0GR 1DU3A 3QO4A 1TNRR 3URFZ 4RSUD 2UWIA 4MSVB 4M4PA 1FT4A 1D4VA 3ME4A
chains in the Genus database with same CATH superfamily

4MXWR 4BK5A 1ZA3R 4OD2S 4I9XC 3ALQR 3U3QA 2E4YA 3TJEF 4BK4A 5L36B 3BUKC 2QR6A 4YN0A 3MHDD 1NCFA 4J6GC 3ME2R 3MBWA 1EXTA 3U3VA 1JMAB 3U3TA 3X3FA 3U3SA 4FHQA 1SG1X 2H9GR 4GIQR 3WVTA 2HEYR 2AW2B 4M4RA 5BNQR 3THMF 5IHLA 3QBQB 2E4WA 3MI8D 2E4UA 3U3PA 2E4XA 4N90R 4KGQC 2X10A 3IJ2X 4KGGC 3K51B 3QD6R 2E4VA 5DMJA 5CIRE 4E4DR 3FL7A 2HEVR 1D0GR 1DU3A 3QO4A 1TNRR 3URFZ 4RSUD 2UWIA 4MSVB 4M4PA 1FT4A 1D4VA 3ME4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MXW R;  4BK5 A;  1ZA3 R;  4OD2 S;  4I9X C;  3ALQ R;  3U3Q A;  5L36 B;  3TJE F;  4BK4 A;  3BUK C;  4YN0 A;  3MHD D;  1NCF A;  4J6G C;  3ME2 R;  3MBW A;  1EXT A;  3U3V A;  1JMA B;  3U3T A;  3X3F A;  3U3S A;  4FHQ A;  1SG1 X;  2H9G R;  4GIQ R;  3WVT A;  2HEY R;  2AW2 B;  4M4R A;  5BNQ R;  3THM F;  5IHL A;  3QBQ B;  3MI8 D;  3U3P A;  4N90 R;  4KGQ C;  2X10 A;  3IJ2 X;  4KGG C;  3K51 B;  3QD6 R;  5DMJ A;  5CIR E;  4E4D R;  3FL7 A;  2HEV R;  1D0G R;  1DU3 A;  3QO4 A;  1TNR R;  3URF Z;  4RSU D;  2UWI A;  4MSV B;  4M4P A;  1FT4 A;  1D4V A;  3ME4 A; 
#chains in the Genus database with same CATH topology
 4MXW R;  4BK5 A;  1ZA3 R;  4OD2 S;  4I9X C;  3ALQ R;  3U3Q A;  2E4Y A;  3TJE F;  4BK4 A;  5L36 B;  3BUK C;  2QR6 A;  4YN0 A;  3MHD D;  1NCF A;  4J6G C;  3ME2 R;  3MBW A;  1EXT A;  3U3V A;  1JMA B;  3U3T A;  3X3F A;  3U3S A;  4FHQ A;  1SG1 X;  2H9G R;  4GIQ R;  3WVT A;  2HEY R;  2AW2 B;  4M4R A;  5BNQ R;  3THM F;  5IHL A;  3QBQ B;  2E4W A;  3MI8 D;  2E4U A;  3U3P A;  2E4X A;  4N90 R;  4KGQ C;  2X10 A;  3IJ2 X;  4KGG C;  3K51 B;  3QD6 R;  2E4V A;  5DMJ A;  5CIR E;  4E4D R;  3FL7 A;  2HEV R;  1D0G R;  1DU3 A;  3QO4 A;  1TNR R;  3URF Z;  4RSU D;  2UWI A;  4MSV B;  4M4P A;  1FT4 A;  1D4V A;  3ME4 A; 
#chains in the Genus database with same CATH homology
 4MXW R;  4BK5 A;  1ZA3 R;  4OD2 S;  4I9X C;  3ALQ R;  3U3Q A;  5L36 B;  3TJE F;  4BK4 A;  3BUK C;  4YN0 A;  3MHD D;  1NCF A;  4J6G C;  3ME2 R;  3MBW A;  1EXT A;  3U3V A;  1JMA B;  3U3T A;  3X3F A;  3U3S A;  4FHQ A;  1SG1 X;  2H9G R;  4GIQ R;  3WVT A;  2HEY R;  2AW2 B;  4M4R A;  5BNQ R;  3THM F;  5IHL A;  3QBQ B;  3MI8 D;  3U3P A;  4N90 R;  4KGQ C;  2X10 A;  3IJ2 X;  4KGG C;  3K51 B;  3QD6 R;  5DMJ A;  5CIR E;  4E4D R;  3FL7 A;  2HEV R;  1D0G R;  1DU3 A;  3QO4 A;  1TNR R;  3URF Z;  4RSU D;  2UWI A;  4MSV B;  4M4P A;  1FT4 A;  1D4V A;  3ME4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WVTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations