3WVTA

Structural and biochemical study of equine lentivirus receptor 1
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
102
structure length
102
Chain Sequence
PQCKEEEYPVGTECCPKCSPGYRVKQACGELTGTVCVPCAPRTFSAHLNGLSKCLPCRPCDPAMGLVIRRDCSSTENTECGCDQGHFCVSEKGDDCVECQPH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS2 (52-55)TIV1 (48-51)TVIII1 (40-43)TI2 (68-71)TI1 (43-46)S4 (74-77)S1 (46-49)TII1 (58-61)TII2 (79-82)S3 (61-65)TVIII2 (63-66)S5 (82-83)S6 (94-95)3H1 (101-103)TVIII3 (90-93)Updating...
connected with : NaN
molecule tags Protein binding
source organism Equus caballus
publication title Structural insight into equine lentivirus receptor 1
pubmed doi rcsb
molecule keywords ELR1
total genus 22
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2014-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3wvtA01
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3wvtA02
2X10A 3K51B 4M4RA 2H9GR 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FT4A 3MBWA 2UWIA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 3X3FA 1EXTA 4J6GC 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 1DU3A 5L36B 3ME4A 4FHQA 3THMF 4OD2S 4RSUD 4KGGC 5CIRE 5IHLA 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH superfamily
2X10A 3K51B 4M4RA 2H9GR 2E4UA 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FT4A 3MBWA 2UWIA 2E4WA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 2QR6A 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 2E4VA 1EXTA 4J6GC 3X3FA 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 1DU3A 2E4XA 5L36B 2E4YA 3ME4A 4FHQA 4OD2S 3THMF 4RSUD 4KGGC 5CIRE 5IHLA 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH topology
2X10A 3K51B 4M4RA 2H9GR 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FT4A 3MBWA 2UWIA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 3X3FA 1EXTA 4J6GC 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 1DU3A 5L36B 3ME4A 4FHQA 3THMF 4OD2S 4RSUD 4KGGC 5CIRE 5IHLA 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FT4 A;  3MBW A;  2UWI A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  3X3F A;  1EXT A;  4J6G C;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  1DU3 A;  5L36 B;  3ME4 A;  4FHQ A;  3THM F;  4OD2 S;  4RSU D;  4KGG C;  5CIR E;  5IHL A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B; 
#chains in the Genus database with same CATH topology
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  2E4U A;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FT4 A;  3MBW A;  2UWI A;  2E4W A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  2QR6 A;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  2E4V A;  1EXT A;  4J6G C;  3X3F A;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  1DU3 A;  2E4X A;  5L36 B;  2E4Y A;  3ME4 A;  4FHQ A;  4OD2 S;  3THM F;  4RSU D;  4KGG C;  5CIR E;  5IHL A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B; 
#chains in the Genus database with same CATH homology
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FT4 A;  3MBW A;  2UWI A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  3X3F A;  1EXT A;  4J6G C;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  1DU3 A;  5L36 B;  3ME4 A;  4FHQ A;  3THM F;  4OD2 S;  4RSU D;  4KGG C;  5CIR E;  5IHL A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.