The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
418
|
structure length |
416
|
Chain Sequence |
SPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Biosynthetic protein,structural protein
|
| source organism |
Rattus norvegicus
|
| publication title |
Modulation of gephyrin-glycine receptor affinity by multivalency.
pubmed doi rcsb |
| molecule keywords |
Gephyrin
|
| total genus |
105
|
| structure length |
416
|
| sequence length |
418
|
| ec nomenclature |
ec
2.10.1.1: Molybdopterin molybdotransferase. |
| pdb deposition date | 2014-04-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00994 | MoCF_biosynth | Probable molybdopterin binding domain |
| A | PF03453 | MoeA_N | MoeA N-terminal region (domain I and II) |
| A | PF03454 | MoeA_C | MoeA C-terminal region (domain IV) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Beta-clip | MoeA, C-terminal, domain IV | ||
| Mainly Beta | Beta Complex | Molybdopterin biosynthesis moeA protein; domain 3 | Molybdopterin biosynthesis moea protein, domain 3. | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Molybdenum Cofactor Biosythetic Enzyme; Chain A | MoaB/Mog-like domain | ||
| Alpha Beta | Alpha-Beta Complex | Molybdopterin biosynthesis moea protein, domain 2 | Molybdopterin biosynthesis moea protein, domain 2 |
#chains in the Genus database with same CATH superfamily 4U91 A; 4XCW A; 1WU2 A; 5ERS A; 2X3L A; 5ERV A; 3MCJ A; 1G8L A; 1T3E A; 5ERU A; 2NRS A; 2NQN A; 2NQV A; 2NQK A; 4TK3 A; 4LHB A; 4CT9 A; 3IWT A; 4TK1 A; 4NWO A; 1O8O A; 2PBQ A; 1G8R A; 2F7Y A; 2NQR A; 5G2R A; 2FTS A; 5ERT A; 2NRP A; 2NQQ A; 4U90 A; 1UUX A; 2G4R A; 1O8Q A; 3KBQ A; 3TCR A; 2NQU A; 3PZY A; 2F7W A; 1MKZ A; 4TK4 A; 4CTA B; 1EAV A; 3MCH A; 1O8N A; 1UZ5 A; 2IS8 A; 4CT8 A; 1Y5E A; 5ERR A; 4UUW A; 4PD0 A; 1IHC A; 4TWG A; 4PD1 A; 5ERQ A; 3RFQ A; 3K6A A; 1R2K A; 2QQ1 A; 4UUX A; 2G2C A; 2NRO A; 3OI9 A; 4CTA A; 1FC5 A; 2NQS A; 3MCI A; 2NQM A; 1XI8 A; 2FU3 A; 5G2S A; 4UOC A; 1JLJ A; 1DI7 A; 1DI6 A; 1UUY A; #chains in the Genus database with same CATH topology 4U91 A; 4XCW A; 1WU2 A; 5ERS A; 2X3L A; 5ERV A; 3MCJ A; 1G8L A; 1T3E A; 3DQQ A; 5ERU A; 2NRS A; 2NQN A; 2NQV A; 2NQK A; 1HQM D; 4TK3 A; 4LHB A; 4CT9 A; 3IWT A; 4TK1 A; 4NWO A; 1O8O A; 2PBQ A; 1G8R A; 2F7Y A; 5D8H B; 2NQR A; 5G2R A; 2FTS A; 5ERT A; 2NRP A; 2NQQ A; 4U90 A; 1UUX A; 1IW7 D; 2G4R A; 3JSY A; 1O8Q A; 3KBQ A; 3TCR A; 2NQU A; 3PZY A; 2F7W A; 1MKZ A; 4TK4 A; 4CTA B; 1EAV A; 3MCH A; 1O8N A; 1UZ5 A; 2IS8 A; 4CT8 A; 1Y5E A; 5ERR A; 4UUW A; 4PD0 A; 1IHC A; 4TWG A; 4PD1 A; 5D6G A; 5ERQ A; 3RFQ A; 5DMH A; 3K6A A; 1YZY A; 1R2K A; 2QQ1 A; 4UUX A; 2G2C A; 2NRO A; 3OI9 A; 4CTA A; 1FC5 A; 2NQS A; 3MCI A; 2NQM A; 1XI8 A; 2FU3 A; 5G2S A; 4UOC A; 4NWB A; 1JLJ A; 1DI7 A; 1DI6 A; 1I6V D; 1UUY A; #chains in the Genus database with same CATH homology 4U91 A; 4XCW A; 1WU2 A; 5ERS A; 2X3L A; 5ERV A; 3MCJ A; 1G8L A; 1T3E A; 5ERU A; 2NRS A; 2NQN A; 2NQV A; 2NQK A; 1HQM D; 4TK3 A; 4LHB A; 4CT9 A; 3IWT A; 4TK1 A; 4NWO A; 1O8O A; 2PBQ A; 1G8R A; 2F7Y A; 5D8H B; 2NQR A; 5G2R A; 2FTS A; 5ERT A; 2NRP A; 2NQQ A; 4U90 A; 1UUX A; 1IW7 D; 2G4R A; 3JSY A; 1O8Q A; 3KBQ A; 3TCR A; 2NQU A; 3PZY A; 2F7W A; 1MKZ A; 4TK4 A; 4CTA B; 1EAV A; 3MCH A; 1O8N A; 1UZ5 A; 2IS8 A; 4CT8 A; 1Y5E A; 5ERR A; 4UUW A; 4PD0 A; 1IHC A; 4TWG A; 4PD1 A; 5D6G A; 5ERQ A; 3RFQ A; 3K6A A; 1R2K A; 2QQ1 A; 4UUX A; 2G2C A; 2NRO A; 3OI9 A; 4CTA A; 1FC5 A; 2NQS A; 3MCI A; 2NQM A; 1XI8 A; 2FU3 A; 5G2S A; 4UOC A; 4NWB A; 1JLJ A; 1DI7 A; 1DI6 A; 1I6V D; 1UUY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
