4RSU | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	105
structure length	105
Chain Sequence	SLPSCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 105 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of the Light and Hvem Complex rcsb
molecule keywords	Tumor necrosis factor ligand superfamily member 14, soluble
molecule tags	Immune system
source organism	Homo sapiens
total genus	18
structure length	105
sequence length	105
chains with identical sequence	E, F, J, K, L
ec nomenclature
pdb deposition date	2014-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	4rsuD01
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	4rsuD02

1TNRR 3URFZ 3ME2R 3QBQB 3MBWA 3MHDD 4FHQA 4MXWR 4N90R 4MSVB 4OD2S 3U3QA 3U3TA 5BNQR 2HEVR 3U3PA 4E4DR 4RSUD 3U3VA 3X3FA 5IHLA 2HEYR 3IJ2X 4KGGC 1NCFA 4BK4A 1DU3A 3MI8D 3QD6R 2X10A 3FL7A 4M4PA 5CIRE 2AW2B 4I9XC 4YN0A 4GIQR 1JMAB 5L36B 3ALQR 3WVTA 3ME4A 5DMJA 1SG1X 1ZA3R 4J6GC 3BUKC 2H9GR 4M4RA 4BK5A 1D0GR 4KGQC 1FT4A 1D4VA 3K51B 3QO4A 3TJEF 1EXTA 2UWIA 3U3SA 3THMF
chains in the Genus database with same CATH superfamily

1TNRR 3URFZ 3ME2R 3QBQB 3MBWA 3MHDD 4FHQA 4MXWR 2E4UA 4MSVB 4N90R 4OD2S 3U3QA 3U3TA 5BNQR 2HEVR 3U3PA 4E4DR 2E4WA 4RSUD 3U3VA 3X3FA 5IHLA 2HEYR 3IJ2X 4KGGC 1NCFA 4BK4A 1DU3A 3MI8D 3QD6R 2E4VA 2X10A 3FL7A 2E4XA 2E4YA 4M4PA 5CIRE 2AW2B 4I9XC 4YN0A 4GIQR 1JMAB 5L36B 3ALQR 3WVTA 3ME4A 5DMJA 2QR6A 1SG1X 1ZA3R 4J6GC 3BUKC 2H9GR 4M4RA 4BK5A 1D0GR 4KGQC 1FT4A 1D4VA 3K51B 3QO4A 3TJEF 1EXTA 2UWIA 3U3SA 3THMF
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1TNR R;  3URF Z;  3ME2 R;  3QBQ B;  3MBW A;  3MHD D;  4FHQ A;  4MXW R;  4N90 R;  4MSV B;  4OD2 S;  3U3Q A;  3U3T A;  5BNQ R;  2HEV R;  3U3P A;  4E4D R;  4RSU D;  3U3V A;  3X3F A;  5IHL A;  2HEY R;  3IJ2 X;  4KGG C;  1NCF A;  4BK4 A;  1DU3 A;  3MI8 D;  3QD6 R;  2X10 A;  3FL7 A;  4M4P A;  5CIR E;  2AW2 B;  4I9X C;  4YN0 A;  4GIQ R;  1JMA B;  5L36 B;  3ALQ R;  3WVT A;  3ME4 A;  5DMJ A;  1SG1 X;  1ZA3 R;  4J6G C;  3BUK C;  2H9G R;  4M4R A;  4BK5 A;  1D0G R;  4KGQ C;  1FT4 A;  1D4V A;  3K51 B;  3QO4 A;  3TJE F;  1EXT A;  2UWI A;  3U3S A;  3THM F; 
#chains in the Genus database with same CATH topology
 1TNR R;  3URF Z;  3ME2 R;  3QBQ B;  3MBW A;  3MHD D;  4FHQ A;  4MXW R;  2E4U A;  4MSV B;  4N90 R;  4OD2 S;  3U3Q A;  3U3T A;  5BNQ R;  2HEV R;  3U3P A;  4E4D R;  2E4W A;  4RSU D;  3U3V A;  3X3F A;  5IHL A;  2HEY R;  3IJ2 X;  4KGG C;  1NCF A;  4BK4 A;  1DU3 A;  3MI8 D;  3QD6 R;  2E4V A;  2X10 A;  3FL7 A;  2E4X A;  2E4Y A;  4M4P A;  5CIR E;  2AW2 B;  4I9X C;  4YN0 A;  4GIQ R;  1JMA B;  5L36 B;  3ALQ R;  3WVT A;  3ME4 A;  5DMJ A;  2QR6 A;  1SG1 X;  1ZA3 R;  4J6G C;  3BUK C;  2H9G R;  4M4R A;  4BK5 A;  1D0G R;  4KGQ C;  1FT4 A;  1D4V A;  3K51 B;  3QO4 A;  3TJE F;  1EXT A;  2UWI A;  3U3S A;  3THM F; 
#chains in the Genus database with same CATH homology
 1TNR R;  3URF Z;  3ME2 R;  3QBQ B;  3MBW A;  3MHD D;  4FHQ A;  4MXW R;  4N90 R;  4MSV B;  4OD2 S;  3U3Q A;  3U3T A;  5BNQ R;  2HEV R;  3U3P A;  4E4D R;  4RSU D;  3U3V A;  3X3F A;  5IHL A;  2HEY R;  3IJ2 X;  4KGG C;  1NCF A;  4BK4 A;  1DU3 A;  3MI8 D;  3QD6 R;  2X10 A;  3FL7 A;  4M4P A;  5CIR E;  2AW2 B;  4I9X C;  4YN0 A;  4GIQ R;  1JMA B;  5L36 B;  3ALQ R;  3WVT A;  3ME4 A;  5DMJ A;  1SG1 X;  1ZA3 R;  4J6G C;  3BUK C;  2H9G R;  4M4R A;  4BK5 A;  1D0G R;  4KGQ C;  1FT4 A;  1D4V A;  3K51 B;  3QO4 A;  3TJE F;  1EXT A;  2UWI A;  3U3S A;  3THM F;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4RSUD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations