Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
168
|
structure length |
168
|
Chain Sequence |
PTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSDVSSAFEKCHPWTSCETKDLVVQQAGTDKTDVVCGPQD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Immune system/signaling protein
|
| source organism |
Homo sapiens
|
| publication title |
Functional Antagonism of Human CD40 Achieved by Targeting a Unique Species-Specific Epitope.
pubmed doi rcsb |
| molecule keywords |
Tumor necrosis factor receptor superfamily member 5
|
| total genus |
22
|
| structure length |
168
|
| sequence length |
168
|
| chains with identical sequence |
D, F, H
|
| ec nomenclature | |
| pdb deposition date | 2016-02-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00020 | TNFR_c6 | TNFR/NGFR cysteine-rich region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A; domain 2 | Tumor Necrosis Factor Receptor, subunit A, domain 2 | ||
| Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A; domain 2 | Tumor Necrosis Factor Receptor, subunit A, domain 2 |
#chains in the Genus database with same CATH superfamily 3FL7 A; 3K51 B; 3QD6 R; 3U3S A; 3TJE F; 1NCF A; 3X3F A; 1DU3 A; 3WVT A; 4E4D R; 2HEY R; 1D0G R; 4MSV B; 5BNQ R; 1EXT A; 2X10 A; 4RSU D; 3MI8 D; 3MBW A; 2AW2 B; 3U3P A; 2UWI A; 3IJ2 X; 4BK5 A; 4FHQ A; 3ALQ R; 1SG1 X; 3ME2 R; 2HEV R; 5CIR E; 1TNR R; 3ME4 A; 3MHD D; 4GIQ R; 4M4R A; 1D4V A; 1ZA3 R; 2H9G R; 4I9X C; 4YN0 A; 4M4P A; 3U3Q A; 3U3V A; 3QO4 A; 4N90 R; 4BK4 A; 5IHL A; 3BUK C; 3U3T A; 4OD2 S; 5DMJ A; 3QBQ B; 4KGG C; 4J6G C; 4KGQ C; 5L36 B; 3THM F; 4MXW R; 3URF Z; 1FT4 A; 1JMA B; #chains in the Genus database with same CATH topology 3FL7 A; 3K51 B; 3QD6 R; 3U3S A; 3TJE F; 2E4X A; 1NCF A; 3X3F A; 1DU3 A; 3WVT A; 4E4D R; 2HEY R; 1D0G R; 4MSV B; 5BNQ R; 1EXT A; 2QR6 A; 2X10 A; 4RSU D; 3MI8 D; 2E4U A; 3MBW A; 2AW2 B; 2E4Y A; 2E4W A; 3U3P A; 2UWI A; 3IJ2 X; 4BK5 A; 4FHQ A; 3ALQ R; 1SG1 X; 3ME2 R; 2HEV R; 5CIR E; 2E4V A; 1TNR R; 3ME4 A; 3MHD D; 4GIQ R; 4M4R A; 1D4V A; 1ZA3 R; 2H9G R; 4I9X C; 4YN0 A; 4M4P A; 3U3Q A; 3U3V A; 3QO4 A; 4N90 R; 4BK4 A; 5IHL A; 3BUK C; 3U3T A; 4OD2 S; 5DMJ A; 3QBQ B; 4KGG C; 4J6G C; 4KGQ C; 5L36 B; 3THM F; 4MXW R; 3URF Z; 1FT4 A; 1JMA B; #chains in the Genus database with same CATH homology 3FL7 A; 3K51 B; 3QD6 R; 3U3S A; 3TJE F; 1NCF A; 3X3F A; 1DU3 A; 3WVT A; 4E4D R; 2HEY R; 1D0G R; 4MSV B; 5BNQ R; 1EXT A; 2X10 A; 4RSU D; 3MI8 D; 3MBW A; 2AW2 B; 3U3P A; 2UWI A; 3IJ2 X; 4BK5 A; 4FHQ A; 3ALQ R; 1SG1 X; 3ME2 R; 2HEV R; 5CIR E; 1TNR R; 3ME4 A; 3MHD D; 4GIQ R; 4M4R A; 1D4V A; 1ZA3 R; 2H9G R; 4I9X C; 4YN0 A; 4M4P A; 3U3Q A; 3U3V A; 3QO4 A; 4N90 R; 4BK4 A; 5IHL A; 3BUK C; 3U3T A; 4OD2 S; 5DMJ A; 3QBQ B; 4KGG C; 4J6G C; 4KGQ C; 5L36 B; 3THM F; 4MXW R; 3URF Z; 1FT4 A; 1JMA B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...