1AY9A

Wild-type umud' from e. coli
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
108
structure length
108
Chain Sequence
DYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The UmuD' protein filament and its potential role in damage induced mutagenesis.
pubmed doi rcsb
molecule tags Mutagenesis protein
molecule keywords UMUD PROTEIN
total genus 19
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature ec 3.4.21.-:
pdb deposition date 1997-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00717 Peptidase_S24 Peptidase S24-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.109.10 Mainly Beta Ribbon Umud Fragment, subunit A Umud Fragment, subunit A 1ay9A00
2FJRA 2HNFA 4ME8A 1AY9A 2HO0A 1F39A 2FKDA 3JSPA 1B12A 1JHCA 1KN9A 3K2ZA 4NV4A 1JHHA 1UMUA 1KCAA 4K8WA 4N31A 1JHEA 1I4VA 1T7DA 3S04A 1JHFA 3IIQA 3BDNA 3JSOA
chains in the Genus database with same CATH superfamily
2FJRA 2HNFA 4ME8A 1AY9A 2HO0A 1F39A 2FKDA 3JSPA 1B12A 1JHCA 1KN9A 3K2ZA 4NV4A 1JHHA 1UMUA 1KCAA 4K8WA 4N31A 1JHEA 1I4VA 1T7DA 3S04A 1JHFA 3IIQA 3BDNA 3JSOA
chains in the Genus database with same CATH topology
2FJRA 2HNFA 4ME8A 1AY9A 2HO0A 1F39A 2FKDA 3JSPA 1B12A 1JHCA 1KN9A 3K2ZA 4NV4A 1JHHA 1UMUA 1KCAA 4K8WA 4N31A 1JHEA 1I4VA 1T7DA 3S04A 1JHFA 3IIQA 3BDNA 3JSOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FJR A;  2HNF A;  4ME8 A;  1AY9 A;  2HO0 A;  1F39 A;  2FKD A;  3JSP A;  1B12 A;  1JHC A;  1KN9 A;  3K2Z A;  4NV4 A;  1JHH A;  1UMU A;  1KCA A;  4K8W A;  4N31 A;  1JHE A;  1I4V A;  1T7D A;  3S04 A;  1JHF A;  3IIQ A;  3BDN A;  3JSO A; 
#chains in the Genus database with same CATH topology
 2FJR A;  2HNF A;  4ME8 A;  1AY9 A;  2HO0 A;  1F39 A;  2FKD A;  3JSP A;  1B12 A;  1JHC A;  1KN9 A;  3K2Z A;  4NV4 A;  1JHH A;  1UMU A;  1KCA A;  4K8W A;  4N31 A;  1JHE A;  1I4V A;  1T7D A;  3S04 A;  1JHF A;  3IIQ A;  3BDN A;  3JSO A; 
#chains in the Genus database with same CATH homology
 2FJR A;  2HNF A;  4ME8 A;  1AY9 A;  2HO0 A;  1F39 A;  2FKD A;  3JSP A;  1B12 A;  1JHC A;  1KN9 A;  3K2Z A;  4NV4 A;  1JHH A;  1UMU A;  1KCA A;  4K8W A;  4N31 A;  1JHE A;  1I4V A;  1T7D A;  3S04 A;  1JHF A;  3IIQ A;  3BDN A;  3JSO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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