The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
109
|
sequence length |
347
|
structure length |
347
|
Chain Sequence |
TQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRESGV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural analysis of the H166G site-directed mutant of galactose-1-phosphate uridylyltransferase complexed with either UDP-glucose or UDP-galactose: detailed description of the nucleotide sugar binding site.
pubmed doi rcsb |
| molecule keywords |
GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE
|
| molecule tags |
Nucleotidyltransferase
|
| source organism |
Escherichia coli
|
| total genus |
109
|
| structure length |
347
|
| sequence length |
347
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.7.7.12: UDP-glucose--hexose-1-phosphate uridylyltransferase. |
| pdb deposition date | 1996-10-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01087 | GalP_UDP_transf | Galactose-1-phosphate uridyl transferase, N-terminal domain |
| A | PF02744 | GalP_UDP_tr_C | Galactose-1-phosphate uridyl transferase, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT-like | ||
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT-like |
#chains in the Genus database with same CATH superfamily 5RHN A; 4EQH A; 3IMI A; 3RHN A; 3O1C A; 3KSV A; 4XBA A; 4QDE A; 5IPB A; 4NK0 A; 5CS2 A; 5ED6 A; 4NDG A; 6FIT A; 3R6F A; 1ST4 A; 3O1X A; 1ST0 A; 3NRD A; 3LB5 A; 3O0M A; 4ZKL A; 1AV5 A; 1Y23 A; 3BLA A; 1KPA A; 4NJY A; 5FIT A; 1KPC A; 4NDH A; 2EO4 A; 3FIT A; 3QGZ A; 5I2F A; 1KPE A; 4QEB A; 3SZQ A; 4EQE A; 2FHI A; 4YKL B; 1XMM A; 3SPL A; 4NJX A; 1GUQ A; 3OJ7 A; 2Q4L A; 4NDI A; 4INI A; 4NDF A; 3L7X A; 4INC A; 5EMT A; 1KPB A; 1HXP A; 5I2E A; 1ZWJ A; 1FHI A; 5IN3 A; 4QDV A; 1RZY A; 3BL7 A; 1EMS A; 2FIT A; 3P0T A; 4ZKV A; 3ANO A; 4FIT A; 1FIT A; 1KPF A; 3N1S A; 5IPE A; 3I24 A; 3SPD A; 1GUP A; 1Z84 A; 2Q4H A; 6RHN A; 3BL9 A; 4RHN A; 3I4S A; 3OHE A; 4ZGL A; 1VLR A; 3O1Z A; 5BV3 A; 3N1T A; 5ED3 A; 3TW2 A; 5IPC A; 3SP4 A; 3OXK A; 2H39 A; 3WO5 A; 2OIK A; 4NJZ A; 3OMF A; 4EQG A; 5IPD A; 4EGU A; 1HXQ A; 1XML A; #chains in the Genus database with same CATH topology 2R7J A; 4G0A A; 2LJW A; 5RHN A; 4EQH A; 3IMI A; 3RHN A; 3O1C A; 3KSV A; 4XBA A; 4QDE A; 5IPB A; 4NK0 A; 2R8F A; 5CS2 A; 5ED6 A; 4NDG A; 2R7C A; 6FIT A; 3R6F A; 4I5W A; 4I5V A; 1ST4 A; 3O1X A; 1ST0 A; 3NRD A; 3LB5 A; 3O0M A; 4ZKL A; 1AV5 A; 1Y23 A; 3BLA A; 1KPA A; 4NJY A; 5FIT A; 1KPC A; 4NDH A; 2EO4 A; 3FIT A; 2POF A; 3QGZ A; 1KPE A; 2GU0 A; 4QEB A; 5I2F A; 3SZQ A; 4EQE A; 2R7P A; 2FHI A; 4YKL B; 4I5T A; 1XMM A; 3SPL A; 4NJX A; 1GUQ A; 3OJ7 A; 2Q4L A; 4NDI A; 4INI A; 4NDF A; 3L7X A; 4INC A; 5EMT A; 1KPB A; 1HXP A; 5I2E A; 1ZWJ A; 1FHI A; 5IN3 A; 4G0J A; 1RZY A; 3BL7 A; 1EMS A; 4QDV A; 2FIT A; 3P0T A; 4ZKV A; 3ANO A; 4FIT A; 1FIT A; 1KPF A; 1L9V A; 3N1S A; 5IPE A; 3I24 A; 3SPD A; 1GUP A; 1Z84 A; 2Q4H A; 6RHN A; 3BL9 A; 4RHN A; 3I4S A; 3OHE A; 4ZGL A; 1VLR A; 3O1Z A; 5BV3 A; 3N1T A; 5ED3 A; 3TW2 A; 5IPC A; 3SP4 A; 3OXK A; 2H39 A; 3WO5 A; 2OIK A; 4NJZ A; 3OMF A; 4EQG A; 5IPD A; 4EGU A; 1HXQ A; 1XML A; #chains in the Genus database with same CATH homology 5RHN A; 4EQH A; 3IMI A; 3RHN A; 3O1C A; 3KSV A; 4XBA A; 4QDE A; 5IPB A; 4NK0 A; 5CS2 A; 5ED6 A; 4NDG A; 6FIT A; 3R6F A; 1ST4 A; 3O1X A; 1ST0 A; 3NRD A; 3LB5 A; 3O0M A; 4ZKL A; 1AV5 A; 1Y23 A; 3BLA A; 1KPA A; 4NJY A; 5FIT A; 1KPC A; 4NDH A; 2EO4 A; 3FIT A; 3QGZ A; 5I2F A; 1KPE A; 4QEB A; 3SZQ A; 4EQE A; 2FHI A; 4YKL B; 1XMM A; 3SPL A; 4NJX A; 1GUQ A; 3OJ7 A; 2Q4L A; 4NDI A; 4INI A; 4NDF A; 3L7X A; 4INC A; 5EMT A; 1KPB A; 1HXP A; 5I2E A; 1ZWJ A; 1FHI A; 5IN3 A; 4QDV A; 1RZY A; 3BL7 A; 1EMS A; 2FIT A; 3P0T A; 4ZKV A; 3ANO A; 4FIT A; 1FIT A; 1KPF A; 3N1S A; 5IPE A; 3I24 A; 3SPD A; 1GUP A; 1Z84 A; 2Q4H A; 6RHN A; 3BL9 A; 4RHN A; 3I4S A; 3OHE A; 4ZGL A; 1VLR A; 3O1Z A; 5BV3 A; 3N1T A; 5ED3 A; 3TW2 A; 5IPC A; 3SP4 A; 3OXK A; 2H39 A; 3WO5 A; 2OIK A; 4NJZ A; 3OMF A; 4EQG A; 5IPD A; 4EGU A; 1HXQ A; 1XML A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
