1KPBA

Pkci-1-apo
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
113
structure length
113
Chain Sequence
GGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
pubmed doi rcsb
molecule tags Protein kinase c interacting protein
source organism Homo sapiens
molecule keywords HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
total genus 27
structure length 113
sequence length 113
chains with identical sequence B
ec nomenclature
pdb deposition date 1996-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1kpbA00
5RHNA 5IN3A 4NDFA 1ST4A 2FHIA 5IPEA 3SPDA 2Q4HA 1KPFA 4FITA 1ST0A 3NRDA 3FITA 4YKLB 4NK0A 4EQHA 5IPCA 3SZQA 1Z84A 1KPCA 1XMLA 2OIKA 4EGUA 5I2FA 4EQEA 3SP4A 5BV3A 3LB5A 4NJYA 5IPDA 1VLRA 4QEBA 3N1SA 1HXPA 3OHEA 1AV5A 3I4SA 5ED3A 1RZYA 4QDVA 1XMMA 3R6FA 3P0TA 4NDIA 3O1XA 3RHNA 4NJXA 4ZKLA 4RHNA 3QGZA 1GUPA 1Y23A 3TW2A 4EQGA 2H39A 4NJZA 1HXQA 3OMFA 1KPBA 1FITA 3O0MA 2EO4A 6RHNA 3WO5A 3BL9A 1GUQA 4NDHA 4INCA 1ZWJA 1EMSA 4ZGLA 3BL7A 3ANOA 4INIA 5EMTA 5IPBA 6FITA 3OXKA 5CS2A 1FHIA 3O1CA 3SPLA 4QDEA 4XBAA 5FITA 4NDGA 1KPAA 3IMIA 2Q4LA 5ED6A 5I2EA 3BLAA 3I24A 3O1ZA 3KSVA 4ZKVA 3OJ7A 2FITA 3N1TA 3L7XA 1KPEA
chains in the Genus database with same CATH superfamily
5RHNA 5IN3A 4NDFA 1ST4A 2R7CA 2FHIA 5IPEA 3SPDA 2Q4HA 4I5WA 1KPFA 4FITA 1ST0A 3NRDA 2POFA 3FITA 4YKLB 4NK0A 4EQHA 5IPCA 3SZQA 1Z84A 4G0AA 1KPCA 1XMLA 2OIKA 4EGUA 5I2FA 4EQEA 3SP4A 5BV3A 3LB5A 4NJYA 5IPDA 1VLRA 4QEBA 3N1SA 1HXPA 3OHEA 1AV5A 4G0JA 3I4SA 5ED3A 1RZYA 4QDVA 4I5TA 1XMMA 3R6FA 3P0TA 4NDIA 3O1XA 3RHNA 4NJXA 4ZKLA 4RHNA 3QGZA 1GUPA 2GU0A 1Y23A 3TW2A 4EQGA 2H39A 4NJZA 1L9VA 1HXQA 3OMFA 1KPBA 1FITA 3O0MA 2EO4A 6RHNA 3WO5A 3BL9A 1GUQA 4NDHA 2R8FA 4INCA 1ZWJA 2R7PA 1EMSA 4ZGLA 3BL7A 3ANOA 4INIA 4I5VA 2R7JA 5EMTA 5IPBA 6FITA 3OXKA 5CS2A 1FHIA 3O1CA 3SPLA 4QDEA 4XBAA 5FITA 4NDGA 1KPAA 3IMIA 2Q4LA 5ED6A 5I2EA 2LJWA 3BLAA 3I24A 3O1ZA 3KSVA 4ZKVA 3OJ7A 2FITA 3N1TA 3L7XA 1KPEA
chains in the Genus database with same CATH topology
5RHNA 5IN3A 4NDFA 1ST4A 2FHIA 5IPEA 3SPDA 2Q4HA 1KPFA 4FITA 1ST0A 3NRDA 3FITA 4YKLB 4NK0A 4EQHA 5IPCA 3SZQA 1Z84A 1KPCA 1XMLA 2OIKA 4EGUA 5I2FA 4EQEA 3SP4A 5BV3A 3LB5A 4NJYA 5IPDA 1VLRA 4QEBA 3N1SA 1HXPA 3OHEA 1AV5A 3I4SA 5ED3A 1RZYA 4QDVA 1XMMA 3R6FA 3P0TA 4NDIA 3O1XA 3RHNA 4NJXA 4ZKLA 4RHNA 3QGZA 1GUPA 1Y23A 3TW2A 4EQGA 2H39A 4NJZA 1HXQA 3OMFA 1KPBA 1FITA 3O0MA 2EO4A 6RHNA 3WO5A 3BL9A 1GUQA 4NDHA 4INCA 1ZWJA 1EMSA 4ZGLA 3BL7A 3ANOA 4INIA 5EMTA 5IPBA 6FITA 3OXKA 5CS2A 1FHIA 3O1CA 3SPLA 4QDEA 4XBAA 5FITA 4NDGA 1KPAA 3IMIA 2Q4LA 5ED6A 5I2EA 3BLAA 3I24A 3O1ZA 3KSVA 4ZKVA 3OJ7A 2FITA 3N1TA 3L7XA 1KPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5RHN A;  5IN3 A;  4NDF A;  1ST4 A;  2FHI A;  5IPE A;  3SPD A;  2Q4H A;  1KPF A;  4FIT A;  1ST0 A;  3NRD A;  3FIT A;  4YKL B;  4NK0 A;  4EQH A;  5IPC A;  3SZQ A;  1Z84 A;  1KPC A;  1XML A;  2OIK A;  4EGU A;  5I2F A;  4EQE A;  3SP4 A;  5BV3 A;  3LB5 A;  4NJY A;  5IPD A;  1VLR A;  4QEB A;  3N1S A;  1HXP A;  3OHE A;  1AV5 A;  3I4S A;  5ED3 A;  1RZY A;  4QDV A;  1XMM A;  3R6F A;  3P0T A;  4NDI A;  3O1X A;  3RHN A;  4NJX A;  4ZKL A;  4RHN A;  3QGZ A;  1GUP A;  1Y23 A;  3TW2 A;  4EQG A;  2H39 A;  4NJZ A;  1HXQ A;  3OMF A;  1KPB A;  1FIT A;  3O0M A;  2EO4 A;  6RHN A;  3WO5 A;  3BL9 A;  1GUQ A;  4NDH A;  4INC A;  1ZWJ A;  1EMS A;  4ZGL A;  3BL7 A;  3ANO A;  4INI A;  5EMT A;  5IPB A;  6FIT A;  3OXK A;  5CS2 A;  1FHI A;  3O1C A;  3SPL A;  4QDE A;  4XBA A;  5FIT A;  4NDG A;  1KPA A;  3IMI A;  2Q4L A;  5ED6 A;  5I2E A;  3BLA A;  3I24 A;  3O1Z A;  3KSV A;  4ZKV A;  3OJ7 A;  2FIT A;  3N1T A;  3L7X A;  1KPE A; 
#chains in the Genus database with same CATH topology
 5RHN A;  5IN3 A;  4NDF A;  1ST4 A;  2R7C A;  2FHI A;  5IPE A;  3SPD A;  2Q4H A;  4I5W A;  1KPF A;  4FIT A;  1ST0 A;  3NRD A;  2POF A;  3FIT A;  4YKL B;  4NK0 A;  4EQH A;  5IPC A;  3SZQ A;  1Z84 A;  4G0A A;  1KPC A;  1XML A;  2OIK A;  4EGU A;  5I2F A;  4EQE A;  3SP4 A;  5BV3 A;  3LB5 A;  4NJY A;  5IPD A;  1VLR A;  4QEB A;  3N1S A;  1HXP A;  3OHE A;  1AV5 A;  4G0J A;  3I4S A;  5ED3 A;  1RZY A;  4QDV A;  4I5T A;  1XMM A;  3R6F A;  3P0T A;  4NDI A;  3O1X A;  3RHN A;  4NJX A;  4ZKL A;  4RHN A;  3QGZ A;  1GUP A;  2GU0 A;  1Y23 A;  3TW2 A;  4EQG A;  2H39 A;  4NJZ A;  1L9V A;  1HXQ A;  3OMF A;  1KPB A;  1FIT A;  3O0M A;  2EO4 A;  6RHN A;  3WO5 A;  3BL9 A;  1GUQ A;  4NDH A;  2R8F A;  4INC A;  1ZWJ A;  2R7P A;  1EMS A;  4ZGL A;  3BL7 A;  3ANO A;  4INI A;  4I5V A;  2R7J A;  5EMT A;  5IPB A;  6FIT A;  3OXK A;  5CS2 A;  1FHI A;  3O1C A;  3SPL A;  4QDE A;  4XBA A;  5FIT A;  4NDG A;  1KPA A;  3IMI A;  2Q4L A;  5ED6 A;  5I2E A;  2LJW A;  3BLA A;  3I24 A;  3O1Z A;  3KSV A;  4ZKV A;  3OJ7 A;  2FIT A;  3N1T A;  3L7X A;  1KPE A; 
#chains in the Genus database with same CATH homology
 5RHN A;  5IN3 A;  4NDF A;  1ST4 A;  2FHI A;  5IPE A;  3SPD A;  2Q4H A;  1KPF A;  4FIT A;  1ST0 A;  3NRD A;  3FIT A;  4YKL B;  4NK0 A;  4EQH A;  5IPC A;  3SZQ A;  1Z84 A;  1KPC A;  1XML A;  2OIK A;  4EGU A;  5I2F A;  4EQE A;  3SP4 A;  5BV3 A;  3LB5 A;  4NJY A;  5IPD A;  1VLR A;  4QEB A;  3N1S A;  1HXP A;  3OHE A;  1AV5 A;  3I4S A;  5ED3 A;  1RZY A;  4QDV A;  1XMM A;  3R6F A;  3P0T A;  4NDI A;  3O1X A;  3RHN A;  4NJX A;  4ZKL A;  4RHN A;  3QGZ A;  1GUP A;  1Y23 A;  3TW2 A;  4EQG A;  2H39 A;  4NJZ A;  1HXQ A;  3OMF A;  1KPB A;  1FIT A;  3O0M A;  2EO4 A;  6RHN A;  3WO5 A;  3BL9 A;  1GUQ A;  4NDH A;  4INC A;  1ZWJ A;  1EMS A;  4ZGL A;  3BL7 A;  3ANO A;  4INI A;  5EMT A;  5IPB A;  6FIT A;  3OXK A;  5CS2 A;  1FHI A;  3O1C A;  3SPL A;  4QDE A;  4XBA A;  5FIT A;  4NDG A;  1KPA A;  3IMI A;  2Q4L A;  5ED6 A;  5I2E A;  3BLA A;  3I24 A;  3O1Z A;  3KSV A;  4ZKV A;  3OJ7 A;  2FIT A;  3N1T A;  3L7X A;  1KPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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