1KPCA

Pkci-1-apo+zinc
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
111
structure length
111
Chain Sequence
DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
pubmed doi rcsb
molecule tags Protein kinase c interacting protein
source organism Homo sapiens
molecule keywords HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
total genus 26
structure length 111
sequence length 111
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1996-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1kpcA00
4EQHA 1KPEA 3L7XA 4NDGA 3OHEA 5IPDA 3O1XA 4YKLB 4FITA 3SPLA 4INCA 1HXQA 3LB5A 5CS2A 3BL9A 4EQEA 3OMFA 4QEBA 4XBAA 1HXPA 4RHNA 3NRDA 1AV5A 5ED3A 3SZQA 3QGZA 3SPDA 6FITA 1GUQA 2H39A 1Y23A 3P0TA 4INIA 4QDEA 4ZGLA 3OJ7A 1GUPA 3N1TA 1ST0A 3O0MA 5FITA 3O1ZA 4NJZA 4EGUA 3KSVA 3TW2A 4ZKLA 1EMSA 1KPFA 3I24A 4ZKVA 5IPCA 3OXKA 3SP4A 1KPBA 2FHIA 1XMMA 5ED6A 2Q4HA 6RHNA 4EQGA 3IMIA 1ZWJA 4NDFA 3N1SA 5IPBA 5IN3A 2FITA 5EMTA 2Q4LA 5I2FA 4QDVA 2OIKA 1Z84A 3FITA 4NJXA 3BLAA 5BV3A 1KPAA 3R6FA 4NDIA 1VLRA 1ST4A 3O1CA 1FITA 4NJYA 3I4SA 2EO4A 1KPCA 4NK0A 5RHNA 1XMLA 3BL7A 5I2EA 4NDHA 3ANOA 3RHNA 1FHIA 5IPEA 3WO5A 1RZYA
chains in the Genus database with same CATH superfamily
4I5TA 4EQHA 1KPEA 3L7XA 4NDGA 3OHEA 5IPDA 2POFA 3O1XA 4YKLB 4FITA 3SPLA 4INCA 1HXQA 3LB5A 5CS2A 3BL9A 4EQEA 3OMFA 4QEBA 4XBAA 1HXPA 4I5VA 4RHNA 3NRDA 1AV5A 4I5WA 5ED3A 3SZQA 3QGZA 3SPDA 6FITA 2GU0A 1GUQA 2R8FA 2R7CA 2H39A 1Y23A 3P0TA 4INIA 4QDEA 4ZGLA 3OJ7A 1GUPA 3N1TA 1ST0A 3O0MA 5FITA 3O1ZA 4NJZA 4EGUA 3KSVA 3TW2A 4ZKLA 1EMSA 1KPFA 3I24A 4ZKVA 5IPCA 3OXKA 3SP4A 2LJWA 4G0AA 1KPBA 2FHIA 1XMMA 5ED6A 2Q4HA 4G0JA 2R7JA 6RHNA 2R7PA 4EQGA 3IMIA 1ZWJA 4NDFA 3N1SA 5IPBA 5IN3A 2FITA 5EMTA 2Q4LA 1L9VA 5I2FA 4QDVA 2OIKA 1Z84A 3FITA 4NJXA 3BLAA 5BV3A 1KPAA 3R6FA 4NDIA 1VLRA 1ST4A 3O1CA 1FITA 4NJYA 3I4SA 2EO4A 1KPCA 4NK0A 5RHNA 1XMLA 3BL7A 5I2EA 4NDHA 3ANOA 3RHNA 1FHIA 5IPEA 3WO5A 1RZYA
chains in the Genus database with same CATH topology
4EQHA 1KPEA 3L7XA 4NDGA 3OHEA 5IPDA 3O1XA 4YKLB 4FITA 3SPLA 4INCA 1HXQA 3LB5A 5CS2A 3BL9A 4EQEA 3OMFA 4QEBA 4XBAA 1HXPA 4RHNA 3NRDA 1AV5A 5ED3A 3SZQA 3QGZA 3SPDA 6FITA 1GUQA 2H39A 1Y23A 3P0TA 4INIA 4QDEA 4ZGLA 3OJ7A 1GUPA 3N1TA 1ST0A 3O0MA 5FITA 3O1ZA 4NJZA 4EGUA 3KSVA 3TW2A 4ZKLA 1EMSA 1KPFA 3I24A 4ZKVA 5IPCA 3OXKA 3SP4A 1KPBA 2FHIA 1XMMA 5ED6A 2Q4HA 6RHNA 4EQGA 3IMIA 1ZWJA 4NDFA 3N1SA 5IPBA 5IN3A 2FITA 5EMTA 2Q4LA 5I2FA 4QDVA 2OIKA 1Z84A 3FITA 4NJXA 3BLAA 5BV3A 1KPAA 3R6FA 4NDIA 1VLRA 1ST4A 3O1CA 1FITA 4NJYA 3I4SA 2EO4A 1KPCA 4NK0A 5RHNA 1XMLA 3BL7A 5I2EA 4NDHA 3ANOA 3RHNA 1FHIA 5IPEA 3WO5A 1RZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EQH A;  1KPE A;  3L7X A;  4NDG A;  3OHE A;  5IPD A;  3O1X A;  4YKL B;  4FIT A;  3SPL A;  4INC A;  1HXQ A;  3LB5 A;  5CS2 A;  3BL9 A;  4EQE A;  3OMF A;  4QEB A;  4XBA A;  1HXP A;  4RHN A;  3NRD A;  1AV5 A;  5ED3 A;  3SZQ A;  3QGZ A;  3SPD A;  6FIT A;  1GUQ A;  2H39 A;  1Y23 A;  3P0T A;  4INI A;  4QDE A;  4ZGL A;  3OJ7 A;  1GUP A;  3N1T A;  1ST0 A;  3O0M A;  5FIT A;  3O1Z A;  4NJZ A;  4EGU A;  3KSV A;  3TW2 A;  4ZKL A;  1EMS A;  1KPF A;  3I24 A;  4ZKV A;  5IPC A;  3OXK A;  3SP4 A;  1KPB A;  2FHI A;  1XMM A;  5ED6 A;  2Q4H A;  6RHN A;  4EQG A;  3IMI A;  1ZWJ A;  4NDF A;  3N1S A;  5IPB A;  5IN3 A;  2FIT A;  5EMT A;  2Q4L A;  5I2F A;  4QDV A;  2OIK A;  1Z84 A;  3FIT A;  4NJX A;  3BLA A;  5BV3 A;  1KPA A;  3R6F A;  4NDI A;  1VLR A;  1ST4 A;  3O1C A;  1FIT A;  4NJY A;  3I4S A;  2EO4 A;  1KPC A;  4NK0 A;  5RHN A;  1XML A;  3BL7 A;  5I2E A;  4NDH A;  3ANO A;  3RHN A;  1FHI A;  5IPE A;  3WO5 A;  1RZY A; 
#chains in the Genus database with same CATH topology
 4I5T A;  4EQH A;  1KPE A;  3L7X A;  4NDG A;  3OHE A;  5IPD A;  2POF A;  3O1X A;  4YKL B;  4FIT A;  3SPL A;  4INC A;  1HXQ A;  3LB5 A;  5CS2 A;  3BL9 A;  4EQE A;  3OMF A;  4QEB A;  4XBA A;  1HXP A;  4I5V A;  4RHN A;  3NRD A;  1AV5 A;  4I5W A;  5ED3 A;  3SZQ A;  3QGZ A;  3SPD A;  6FIT A;  2GU0 A;  1GUQ A;  2R8F A;  2R7C A;  2H39 A;  1Y23 A;  3P0T A;  4INI A;  4QDE A;  4ZGL A;  3OJ7 A;  1GUP A;  3N1T A;  1ST0 A;  3O0M A;  5FIT A;  3O1Z A;  4NJZ A;  4EGU A;  3KSV A;  3TW2 A;  4ZKL A;  1EMS A;  1KPF A;  3I24 A;  4ZKV A;  5IPC A;  3OXK A;  3SP4 A;  2LJW A;  4G0A A;  1KPB A;  2FHI A;  1XMM A;  5ED6 A;  2Q4H A;  4G0J A;  2R7J A;  6RHN A;  2R7P A;  4EQG A;  3IMI A;  1ZWJ A;  4NDF A;  3N1S A;  5IPB A;  5IN3 A;  2FIT A;  5EMT A;  2Q4L A;  1L9V A;  5I2F A;  4QDV A;  2OIK A;  1Z84 A;  3FIT A;  4NJX A;  3BLA A;  5BV3 A;  1KPA A;  3R6F A;  4NDI A;  1VLR A;  1ST4 A;  3O1C A;  1FIT A;  4NJY A;  3I4S A;  2EO4 A;  1KPC A;  4NK0 A;  5RHN A;  1XML A;  3BL7 A;  5I2E A;  4NDH A;  3ANO A;  3RHN A;  1FHI A;  5IPE A;  3WO5 A;  1RZY A; 
#chains in the Genus database with same CATH homology
 4EQH A;  1KPE A;  3L7X A;  4NDG A;  3OHE A;  5IPD A;  3O1X A;  4YKL B;  4FIT A;  3SPL A;  4INC A;  1HXQ A;  3LB5 A;  5CS2 A;  3BL9 A;  4EQE A;  3OMF A;  4QEB A;  4XBA A;  1HXP A;  4RHN A;  3NRD A;  1AV5 A;  5ED3 A;  3SZQ A;  3QGZ A;  3SPD A;  6FIT A;  1GUQ A;  2H39 A;  1Y23 A;  3P0T A;  4INI A;  4QDE A;  4ZGL A;  3OJ7 A;  1GUP A;  3N1T A;  1ST0 A;  3O0M A;  5FIT A;  3O1Z A;  4NJZ A;  4EGU A;  3KSV A;  3TW2 A;  4ZKL A;  1EMS A;  1KPF A;  3I24 A;  4ZKV A;  5IPC A;  3OXK A;  3SP4 A;  1KPB A;  2FHI A;  1XMM A;  5ED6 A;  2Q4H A;  6RHN A;  4EQG A;  3IMI A;  1ZWJ A;  4NDF A;  3N1S A;  5IPB A;  5IN3 A;  2FIT A;  5EMT A;  2Q4L A;  5I2F A;  4QDV A;  2OIK A;  1Z84 A;  3FIT A;  4NJX A;  3BLA A;  5BV3 A;  1KPA A;  3R6F A;  4NDI A;  1VLR A;  1ST4 A;  3O1C A;  1FIT A;  4NJY A;  3I4S A;  2EO4 A;  1KPC A;  4NK0 A;  5RHN A;  1XML A;  3BL7 A;  5I2E A;  4NDH A;  3ANO A;  3RHN A;  1FHI A;  5IPE A;  3WO5 A;  1RZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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