1KPCA

Pkci-1-apo+zinc
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
111
structure length
111
Chain Sequence
DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
pubmed doi rcsb
molecule tags Protein kinase c interacting protein
source organism Homo sapiens
molecule keywords HUMAN PROTEIN KINASE C INTERACTING PROTEIN 1 (ZINC PROTEIN)
total genus 26
structure length 111
sequence length 111
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1996-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 1kpcA00
4NJYA 5I2FA 3BL9A 5IPBA 3SPLA 4ZGLA 1ST0A 6FITA 3R6FA 3IMIA 1GUQA 3OHEA 1KPAA 1KPFA 4QEBA 1HXQA 4EQGA 3O1ZA 5FITA 3I24A 3QGZA 4NDHA 3OXKA 5IPCA 1FHIA 3N1TA 3WO5A 2Q4LA 2Q4HA 4FITA 3N1SA 1VLRA 2FITA 3BLAA 1Z84A 3O1CA 4QDVA 3P0TA 1AV5A 4ZKVA 3RHNA 4RHNA 2H39A 1ZWJA 1XMLA 3FITA 3L7XA 4EGUA 3O0MA 5ED3A 4ZKLA 5BV3A 3I4SA 2FHIA 4NDIA 1ST4A 5IPEA 4YKLB 3BL7A 1Y23A 5IN3A 2EO4A 1KPBA 4QDEA 1RZYA 1HXPA 4EQEA 4NK0A 1GUPA 4XBAA 1FITA 4NJZA 3KSVA 5IPDA 4NJXA 5ED6A 3SZQA 3TW2A 1EMSA 3OJ7A 3NRDA 4INCA 5EMTA 3ANOA 4EQHA 1KPEA 3O1XA 5CS2A 2OIKA 4NDGA 6RHNA 3SP4A 3SPDA 1KPCA 5I2EA 3LB5A 4NDFA 1XMMA 5RHNA 3OMFA 4INIA
chains in the Genus database with same CATH superfamily
4NJYA 5I2FA 3BL9A 4I5WA 5IPBA 3SPLA 4ZGLA 1ST0A 6FITA 3R6FA 3IMIA 1GUQA 3OHEA 1KPAA 1KPFA 2R7JA 4QEBA 1HXQA 4EQGA 3O1ZA 5FITA 3I24A 3QGZA 2GU0A 4NDHA 3OXKA 5IPCA 2LJWA 2POFA 1FHIA 3N1TA 3WO5A 2Q4LA 2Q4HA 4FITA 3N1SA 1VLRA 2FITA 3BLAA 1Z84A 3O1CA 3P0TA 4QDVA 1AV5A 4ZKVA 2R7CA 3RHNA 4RHNA 2H39A 1ZWJA 4I5TA 4I5VA 1XMLA 3FITA 3L7XA 4EGUA 3O0MA 5ED3A 4ZKLA 5BV3A 3I4SA 2FHIA 4NDIA 1ST4A 5IPEA 4YKLB 3BL7A 1Y23A 2R8FA 5IN3A 2EO4A 1KPBA 4QDEA 1RZYA 1HXPA 4EQEA 4NK0A 1GUPA 4XBAA 1L9VA 1FITA 4NJZA 3KSVA 5IPDA 4NJXA 5ED6A 3SZQA 3TW2A 1EMSA 3OJ7A 3NRDA 4INCA 5EMTA 3ANOA 4EQHA 1KPEA 3O1XA 5CS2A 2OIKA 4NDGA 6RHNA 3SP4A 3SPDA 1KPCA 5I2EA 3LB5A 4G0JA 4G0AA 4NDFA 1XMMA 5RHNA 3OMFA 2R7PA 4INIA
chains in the Genus database with same CATH topology
4NJYA 5I2FA 3BL9A 5IPBA 3SPLA 4ZGLA 1ST0A 6FITA 3R6FA 3IMIA 1GUQA 3OHEA 1KPAA 1KPFA 4QEBA 1HXQA 4EQGA 3O1ZA 5FITA 3I24A 3QGZA 4NDHA 3OXKA 5IPCA 1FHIA 3N1TA 3WO5A 2Q4LA 2Q4HA 4FITA 3N1SA 1VLRA 2FITA 3BLAA 1Z84A 3O1CA 4QDVA 3P0TA 1AV5A 4ZKVA 3RHNA 4RHNA 2H39A 1ZWJA 1XMLA 3FITA 3L7XA 4EGUA 3O0MA 5ED3A 4ZKLA 5BV3A 3I4SA 2FHIA 4NDIA 1ST4A 5IPEA 4YKLB 3BL7A 1Y23A 5IN3A 2EO4A 1KPBA 4QDEA 1RZYA 1HXPA 4EQEA 4NK0A 1GUPA 4XBAA 1FITA 4NJZA 3KSVA 5IPDA 4NJXA 5ED6A 3SZQA 3TW2A 1EMSA 3OJ7A 3NRDA 4INCA 5EMTA 3ANOA 4EQHA 1KPEA 3O1XA 5CS2A 2OIKA 4NDGA 6RHNA 3SP4A 3SPDA 1KPCA 5I2EA 3LB5A 4NDFA 1XMMA 5RHNA 3OMFA 4INIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NJY A;  5I2F A;  3BL9 A;  5IPB A;  3SPL A;  4ZGL A;  1ST0 A;  6FIT A;  3R6F A;  3IMI A;  1GUQ A;  3OHE A;  1KPA A;  1KPF A;  4QEB A;  1HXQ A;  4EQG A;  3O1Z A;  5FIT A;  3I24 A;  3QGZ A;  4NDH A;  3OXK A;  5IPC A;  1FHI A;  3N1T A;  3WO5 A;  2Q4L A;  2Q4H A;  4FIT A;  3N1S A;  1VLR A;  2FIT A;  3BLA A;  1Z84 A;  3O1C A;  4QDV A;  3P0T A;  1AV5 A;  4ZKV A;  3RHN A;  4RHN A;  2H39 A;  1ZWJ A;  1XML A;  3FIT A;  3L7X A;  4EGU A;  3O0M A;  5ED3 A;  4ZKL A;  5BV3 A;  3I4S A;  2FHI A;  4NDI A;  1ST4 A;  5IPE A;  4YKL B;  3BL7 A;  1Y23 A;  5IN3 A;  2EO4 A;  1KPB A;  4QDE A;  1RZY A;  1HXP A;  4EQE A;  4NK0 A;  1GUP A;  4XBA A;  1FIT A;  4NJZ A;  3KSV A;  5IPD A;  4NJX A;  5ED6 A;  3SZQ A;  3TW2 A;  1EMS A;  3OJ7 A;  3NRD A;  4INC A;  5EMT A;  3ANO A;  4EQH A;  1KPE A;  3O1X A;  5CS2 A;  2OIK A;  4NDG A;  6RHN A;  3SP4 A;  3SPD A;  1KPC A;  5I2E A;  3LB5 A;  4NDF A;  1XMM A;  5RHN A;  3OMF A;  4INI A; 
#chains in the Genus database with same CATH topology
 4NJY A;  5I2F A;  3BL9 A;  4I5W A;  5IPB A;  3SPL A;  4ZGL A;  1ST0 A;  6FIT A;  3R6F A;  3IMI A;  1GUQ A;  3OHE A;  1KPA A;  1KPF A;  2R7J A;  4QEB A;  1HXQ A;  4EQG A;  3O1Z A;  5FIT A;  3I24 A;  3QGZ A;  2GU0 A;  4NDH A;  3OXK A;  5IPC A;  2LJW A;  2POF A;  1FHI A;  3N1T A;  3WO5 A;  2Q4L A;  2Q4H A;  4FIT A;  3N1S A;  1VLR A;  2FIT A;  3BLA A;  1Z84 A;  3O1C A;  3P0T A;  4QDV A;  1AV5 A;  4ZKV A;  2R7C A;  3RHN A;  4RHN A;  2H39 A;  1ZWJ A;  4I5T A;  4I5V A;  1XML A;  3FIT A;  3L7X A;  4EGU A;  3O0M A;  5ED3 A;  4ZKL A;  5BV3 A;  3I4S A;  2FHI A;  4NDI A;  1ST4 A;  5IPE A;  4YKL B;  3BL7 A;  1Y23 A;  2R8F A;  5IN3 A;  2EO4 A;  1KPB A;  4QDE A;  1RZY A;  1HXP A;  4EQE A;  4NK0 A;  1GUP A;  4XBA A;  1L9V A;  1FIT A;  4NJZ A;  3KSV A;  5IPD A;  4NJX A;  5ED6 A;  3SZQ A;  3TW2 A;  1EMS A;  3OJ7 A;  3NRD A;  4INC A;  5EMT A;  3ANO A;  4EQH A;  1KPE A;  3O1X A;  5CS2 A;  2OIK A;  4NDG A;  6RHN A;  3SP4 A;  3SPD A;  1KPC A;  5I2E A;  3LB5 A;  4G0J A;  4G0A A;  4NDF A;  1XMM A;  5RHN A;  3OMF A;  2R7P A;  4INI A; 
#chains in the Genus database with same CATH homology
 4NJY A;  5I2F A;  3BL9 A;  5IPB A;  3SPL A;  4ZGL A;  1ST0 A;  6FIT A;  3R6F A;  3IMI A;  1GUQ A;  3OHE A;  1KPA A;  1KPF A;  4QEB A;  1HXQ A;  4EQG A;  3O1Z A;  5FIT A;  3I24 A;  3QGZ A;  4NDH A;  3OXK A;  5IPC A;  1FHI A;  3N1T A;  3WO5 A;  2Q4L A;  2Q4H A;  4FIT A;  3N1S A;  1VLR A;  2FIT A;  3BLA A;  1Z84 A;  3O1C A;  4QDV A;  3P0T A;  1AV5 A;  4ZKV A;  3RHN A;  4RHN A;  2H39 A;  1ZWJ A;  1XML A;  3FIT A;  3L7X A;  4EGU A;  3O0M A;  5ED3 A;  4ZKL A;  5BV3 A;  3I4S A;  2FHI A;  4NDI A;  1ST4 A;  5IPE A;  4YKL B;  3BL7 A;  1Y23 A;  5IN3 A;  2EO4 A;  1KPB A;  4QDE A;  1RZY A;  1HXP A;  4EQE A;  4NK0 A;  1GUP A;  4XBA A;  1FIT A;  4NJZ A;  3KSV A;  5IPD A;  4NJX A;  5ED6 A;  3SZQ A;  3TW2 A;  1EMS A;  3OJ7 A;  3NRD A;  4INC A;  5EMT A;  3ANO A;  4EQH A;  1KPE A;  3O1X A;  5CS2 A;  2OIK A;  4NDG A;  6RHN A;  3SP4 A;  3SPD A;  1KPC A;  5I2E A;  3LB5 A;  4NDF A;  1XMM A;  5RHN A;  3OMF A;  4INI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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