1WX2B

Crystal structure of the oxy-form of the copper-bound streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of hydrogenperoxide
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
72
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (48-51)S1 (45-49)S2 (52-57)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
pubmed doi rcsb
molecule keywords tyrosinase
total genus 15
structure length 72
sequence length 83
ec nomenclature
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 1wx2B01
3AWXB 2JV8A 2ZMYB 2AHKB 2ZWFB 3AWZB 2AHLB 2ZMXB 2ZWDB 2ZWGB 3AWYB 3AX0B 3AWSB 3AWUB 3AWTB 1WX5B 2ZMZB 3AWWB 1WX2B 3AWVB 1WX4B 2ZWEB 1WXCB
chains in the Genus database with same CATH superfamily
3AWXB 1Z03A 3VMHA 2JV8A 2DE5A 2DE6A 2ZMYB 2AHKB 2ZWFB 3AWZB 2DE7A 2AHLB 3GKQA 4NB9A 4NBGA 2ZMXB 4NBAA 4NB8A 2ZWDB 3GCFA 2ZWGB 3AWYB 3AX0B 3AWSB 3AWUB 3AWTB 3VMGA 4NBFA 1WX5B 1WW9A 2ZMZB 1Z01A 3AWWB 4NBHA 4NBCA 1WX2B 4NBEA 3AWVB 1Z02A 3VMIA 4NBBA 1WX4B 4NBDA 2ZWEB 1WXCB
chains in the Genus database with same CATH topology
3AWXB 2JV8A 2ZMYB 2AHKB 2ZWFB 3AWZB 2AHLB 2ZMXB 2ZWDB 2ZWGB 3AWYB 3AX0B 3AWSB 3AWUB 3AWTB 1WX5B 2ZMZB 3AWWB 1WX2B 3AWVB 1WX4B 2ZWEB 1WXCB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWX B;  2JV8 A;  2ZMY B;  2AHK B;  2ZWF B;  3AWZ B;  2AHL B;  2ZMX B;  2ZWD B;  2ZWG B;  3AWY B;  3AX0 B;  3AWS B;  3AWU B;  3AWT B;  1WX5 B;  2ZMZ B;  3AWW B;  1WX2 B;  3AWV B;  1WX4 B;  2ZWE B;  1WXC B; 
#chains in the Genus database with same CATH topology
 3AWX B;  1Z03 A;  3VMH A;  2JV8 A;  2DE5 A;  2DE6 A;  2ZMY B;  2AHK B;  2ZWF B;  3AWZ B;  2DE7 A;  2AHL B;  3GKQ A;  4NB9 A;  4NBG A;  2ZMX B;  4NBA A;  4NB8 A;  2ZWD B;  3GCF A;  2ZWG B;  3AWY B;  3AX0 B;  3AWS B;  3AWU B;  3AWT B;  3VMG A;  4NBF A;  1WX5 B;  1WW9 A;  2ZMZ B;  1Z01 A;  3AWW B;  4NBH A;  4NBC A;  1WX2 B;  4NBE A;  3AWV B;  1Z02 A;  3VMI A;  4NBB A;  1WX4 B;  4NBD A;  2ZWE B;  1WXC B; 
#chains in the Genus database with same CATH homology
 3AWX B;  2JV8 A;  2ZMY B;  2AHK B;  2ZWF B;  3AWZ B;  2AHL B;  2ZMX B;  2ZWD B;  2ZWG B;  3AWY B;  3AX0 B;  3AWS B;  3AWU B;  3AWT B;  1WX5 B;  2ZMZ B;  3AWW B;  1WX2 B;  3AWV B;  1WX4 B;  2ZWE B;  1WXC B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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