1WX4B

Crystal structure of the oxy-form of the copper-bound streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein prepared by the addition of dithiothreitol
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
82
structure length
71
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (48-51)S1 (45-49)S2 (52-57)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
pubmed doi rcsb
molecule keywords tyrosinase
total genus 15
structure length 71
sequence length 82
ec nomenclature
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 1wx4B01
1WX4B 2AHLB 2ZWDB 2ZWEB 3AWZB 3AX0B 3AWUB 3AWYB 2ZMXB 3AWWB 3AWXB 3AWSB 3AWVB 2ZWFB 2ZMYB 2JV8A 1WXCB 2ZWGB 3AWTB 2AHKB 2ZMZB 1WX5B 1WX2B
chains in the Genus database with same CATH superfamily
1WX4B 1Z02A 2AHLB 4NBDA 2ZWDB 2ZWEB 3GKQA 4NBHA 3VMIA 3AWZB 3AX0B 2DE5A 3AWUB 3AWYB 2ZMXB 3AWWB 3AWXB 4NB8A 3AWSB 1Z03A 3AWVB 4NBGA 4NBCA 4NBBA 2ZWFB 2ZMYB 2DE7A 3GCFA 2JV8A 1WXCB 1WW9A 2ZWGB 1WX2B 2AHKB 3AWTB 4NBEA 4NB9A 2ZMZB 4NBFA 4NBAA 3VMHA 3VMGA 2DE6A 1WX5B 1Z01A
chains in the Genus database with same CATH topology
1WX4B 2AHLB 2ZWDB 2ZWEB 3AWZB 3AX0B 3AWUB 3AWYB 2ZMXB 3AWWB 3AWXB 3AWSB 3AWVB 2ZWFB 2ZMYB 2JV8A 1WXCB 2ZWGB 3AWTB 2AHKB 2ZMZB 1WX5B 1WX2B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1WX4 B;  2AHL B;  2ZWD B;  2ZWE B;  3AWZ B;  3AX0 B;  3AWU B;  3AWY B;  2ZMX B;  3AWW B;  3AWX B;  3AWS B;  3AWV B;  2ZWF B;  2ZMY B;  2JV8 A;  1WXC B;  2ZWG B;  3AWT B;  2AHK B;  2ZMZ B;  1WX5 B;  1WX2 B; 
#chains in the Genus database with same CATH topology
 1WX4 B;  1Z02 A;  2AHL B;  4NBD A;  2ZWD B;  2ZWE B;  3GKQ A;  4NBH A;  3VMI A;  3AWZ B;  3AX0 B;  2DE5 A;  3AWU B;  3AWY B;  2ZMX B;  3AWW B;  3AWX B;  4NB8 A;  3AWS B;  1Z03 A;  3AWV B;  4NBG A;  4NBC A;  4NBB A;  2ZWF B;  2ZMY B;  2DE7 A;  3GCF A;  2JV8 A;  1WXC B;  1WW9 A;  2ZWG B;  1WX2 B;  2AHK B;  3AWT B;  4NBE A;  4NB9 A;  2ZMZ B;  4NBF A;  4NBA A;  3VMH A;  3VMG A;  2DE6 A;  1WX5 B;  1Z01 A; 
#chains in the Genus database with same CATH homology
 1WX4 B;  2AHL B;  2ZWD B;  2ZWE B;  3AWZ B;  3AX0 B;  3AWU B;  3AWY B;  2ZMX B;  3AWW B;  3AWX B;  3AWS B;  3AWV B;  2ZWF B;  2ZMY B;  2JV8 A;  1WXC B;  2ZWG B;  3AWT B;  2AHK B;  2ZMZ B;  1WX5 B;  1WX2 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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