1WX5B

Crystal structure of the copper-free streptomyces castaneoglobisporus tyrosinase complexed with a caddie protein in the monoclinic crystal
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
82
structure length
71
Chain Sequence
APESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS2 (52-57)TIV1 (48-51)S1 (45-49)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
pubmed doi rcsb
molecule keywords tyrosinase
total genus 17
structure length 71
sequence length 82
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 1wx5B01
3AWWB 2AHLB 2ZWFB 1WX2B 1WX5B 2AHKB 2JV8A 1WXCB 3AWTB 2ZMZB 2ZWGB 3AWSB 2ZMXB 3AX0B 3AWZB 2ZWDB 3AWXB 1WX4B 2ZWEB 3AWVB 3AWUB 3AWYB 2ZMYB
chains in the Genus database with same CATH superfamily
3AWWB 4NBDA 2AHLB 2ZWFB 2DE5A 1WX2B 2DE7A 4NBFA 1WX5B 2AHKB 4NB8A 2JV8A 3VMGA 1Z03A 1WXCB 2DE6A 1WW9A 3AWTB 1Z02A 4NBCA 4NBBA 2ZMZB 2ZWGB 3AWSB 2ZMXB 3AWZB 3AX0B 2ZWDB 3AWXB 4NBEA 3VMIA 4NBAA 1WX4B 2ZWEB 3AWVB 1Z01A 3GKQA 3AWUB 3GCFA 3AWYB 2ZMYB 4NBGA 4NB9A 4NBHA 3VMHA
chains in the Genus database with same CATH topology
3AWWB 2AHLB 2ZWFB 1WX2B 1WX5B 2AHKB 2JV8A 1WXCB 3AWTB 2ZMZB 2ZWGB 3AWSB 2ZMXB 3AX0B 3AWZB 2ZWDB 3AWXB 1WX4B 2ZWEB 3AWVB 3AWUB 3AWYB 2ZMYB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWW B;  2AHL B;  2ZWF B;  1WX2 B;  1WX5 B;  2AHK B;  2JV8 A;  1WXC B;  3AWT B;  2ZMZ B;  2ZWG B;  3AWS B;  2ZMX B;  3AX0 B;  3AWZ B;  2ZWD B;  3AWX B;  1WX4 B;  2ZWE B;  3AWV B;  3AWU B;  3AWY B;  2ZMY B; 
#chains in the Genus database with same CATH topology
 3AWW B;  4NBD A;  2AHL B;  2ZWF B;  2DE5 A;  1WX2 B;  2DE7 A;  4NBF A;  1WX5 B;  2AHK B;  4NB8 A;  2JV8 A;  3VMG A;  1Z03 A;  1WXC B;  2DE6 A;  1WW9 A;  3AWT B;  1Z02 A;  4NBC A;  4NBB A;  2ZMZ B;  2ZWG B;  3AWS B;  2ZMX B;  3AWZ B;  3AX0 B;  2ZWD B;  3AWX B;  4NBE A;  3VMI A;  4NBA A;  1WX4 B;  2ZWE B;  3AWV B;  1Z01 A;  3GKQ A;  3AWU B;  3GCF A;  3AWY B;  2ZMY B;  4NBG A;  4NB9 A;  4NBH A;  3VMH A; 
#chains in the Genus database with same CATH homology
 3AWW B;  2AHL B;  2ZWF B;  1WX2 B;  1WX5 B;  2AHK B;  2JV8 A;  1WXC B;  3AWT B;  2ZMZ B;  2ZWG B;  3AWS B;  2ZMX B;  3AX0 B;  3AWZ B;  2ZWD B;  3AWX B;  1WX4 B;  2ZWE B;  3AWV B;  3AWU B;  3AWY B;  2ZMY B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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