The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
329
|
structure length |
301
|
Chain Sequence |
PELRKDPVTNRWVIFSPFKSKSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSLT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and Mechanism of an ADP-Glucose Phosphorylase from
Arabidopsis thaliana
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Arabidopsis thaliana
|
| molecule keywords |
putative galactose-1-phosphate uridyl transferase
|
| total genus |
102
|
| structure length |
301
|
| sequence length |
329
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2005-06-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01087 | GalP_UDP_transf | Galactose-1-phosphate uridyl transferase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT-like | ||
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT-like |
#chains in the Genus database with same CATH superfamily 4INC A; 3RHN A; 5I2F A; 1FHI A; 5IPE A; 1AV5 A; 3OHE A; 6RHN A; 3SP4 A; 5IPD A; 3I24 A; 1FIT A; 3OMF A; 1ST4 A; 3O0M A; 3BL9 A; 4FIT A; 5FIT A; 1GUP A; 3QGZ A; 4NDF A; 5IPC A; 4ZGL A; 4EQH A; 2Q4H A; 1KPF A; 1HXP A; 1HXQ A; 5IN3 A; 1XMM A; 4NDH A; 1ZWJ A; 1Z84 A; 3O1C A; 1KPC A; 1GUQ A; 3P0T A; 3N1S A; 4EGU A; 3KSV A; 3O1Z A; 2Q4L A; 2H39 A; 2FHI A; 5BV3 A; 2FIT A; 3I4S A; 5EMT A; 3SPL A; 4NJY A; 4NJX A; 5ED6 A; 1KPA A; 3L7X A; 6FIT A; 5IPB A; 3LB5 A; 3WO5 A; 1KPB A; 4EQG A; 4ZKV A; 1Y23 A; 4XBA A; 5CS2 A; 5I2E A; 3SZQ A; 3SPD A; 4RHN A; 4NJZ A; 4NDG A; 1EMS A; 4INI A; 1KPE A; 4QDE A; 4ZKL A; 3N1T A; 3NRD A; 3BLA A; 1VLR A; 3R6F A; 3TW2 A; 3BL7 A; 1RZY A; 2OIK A; 3OXK A; 4QEB A; 3FIT A; 5ED3 A; 4EQE A; 3ANO A; 3IMI A; 4NK0 A; 5RHN A; 3OJ7 A; 1XML A; 4NDI A; 1ST0 A; 2EO4 A; 4QDV A; 4YKL B; 3O1X A; #chains in the Genus database with same CATH topology 4INC A; 3RHN A; 5I2F A; 1FHI A; 5IPE A; 4G0J A; 1AV5 A; 2R7C A; 3OHE A; 6RHN A; 3SP4 A; 2R8F A; 5IPD A; 3I24 A; 1FIT A; 3OMF A; 1ST4 A; 3O0M A; 3BL9 A; 2GU0 A; 4FIT A; 5FIT A; 1GUP A; 3QGZ A; 4NDF A; 5IPC A; 4ZGL A; 4EQH A; 2Q4H A; 1KPF A; 1HXP A; 1HXQ A; 5IN3 A; 4I5V A; 1XMM A; 4NDH A; 1ZWJ A; 1Z84 A; 3O1C A; 2R7P A; 1KPC A; 1GUQ A; 3P0T A; 3N1S A; 4EGU A; 3KSV A; 3O1Z A; 2Q4L A; 2H39 A; 2FHI A; 5BV3 A; 2FIT A; 3I4S A; 5EMT A; 3SPL A; 2R7J A; 4NJY A; 1L9V A; 2POF A; 4G0A A; 4NJX A; 2LJW A; 5ED6 A; 1KPA A; 3L7X A; 6FIT A; 5IPB A; 3LB5 A; 3WO5 A; 1KPB A; 4EQG A; 4ZKV A; 1Y23 A; 4XBA A; 5CS2 A; 5I2E A; 3SZQ A; 3SPD A; 4RHN A; 4NJZ A; 4NDG A; 1EMS A; 4INI A; 1KPE A; 4I5W A; 4QDE A; 4ZKL A; 3N1T A; 3NRD A; 3BLA A; 1VLR A; 3R6F A; 3TW2 A; 3BL7 A; 1RZY A; 2OIK A; 3OXK A; 4QEB A; 3FIT A; 5ED3 A; 4EQE A; 3ANO A; 3IMI A; 4NK0 A; 5RHN A; 3OJ7 A; 1XML A; 4NDI A; 1ST0 A; 2EO4 A; 4I5T A; 4QDV A; 4YKL B; 3O1X A; #chains in the Genus database with same CATH homology 4INC A; 3RHN A; 5I2F A; 1FHI A; 5IPE A; 1AV5 A; 3OHE A; 6RHN A; 3SP4 A; 5IPD A; 3I24 A; 1FIT A; 3OMF A; 1ST4 A; 3O0M A; 3BL9 A; 4FIT A; 5FIT A; 1GUP A; 3QGZ A; 4NDF A; 5IPC A; 4ZGL A; 4EQH A; 2Q4H A; 1KPF A; 1HXP A; 1HXQ A; 5IN3 A; 1XMM A; 4NDH A; 1ZWJ A; 1Z84 A; 3O1C A; 1KPC A; 1GUQ A; 3P0T A; 3N1S A; 4EGU A; 3KSV A; 3O1Z A; 2Q4L A; 2H39 A; 2FHI A; 5BV3 A; 2FIT A; 3I4S A; 5EMT A; 3SPL A; 4NJY A; 4NJX A; 5ED6 A; 1KPA A; 3L7X A; 6FIT A; 5IPB A; 3LB5 A; 3WO5 A; 1KPB A; 4EQG A; 4ZKV A; 1Y23 A; 4XBA A; 5CS2 A; 5I2E A; 3SZQ A; 3SPD A; 4RHN A; 4NJZ A; 4NDG A; 1EMS A; 4INI A; 1KPE A; 4QDE A; 4ZKL A; 3N1T A; 3NRD A; 3BLA A; 1VLR A; 3R6F A; 3TW2 A; 3BL7 A; 1RZY A; 2OIK A; 3OXK A; 4QEB A; 3FIT A; 5ED3 A; 4EQE A; 3ANO A; 3IMI A; 4NK0 A; 5RHN A; 3OJ7 A; 1XML A; 4NDI A; 1ST0 A; 2EO4 A; 4QDV A; 4YKL B; 3O1X A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
